-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2568

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 463, 471
Couldn't classify 1015, 1056
Sorry, prediction GeneMark_model.110427_t fails validation.
(TGA)	 AG	463-471	GT	GGG
(GAA)	 AG	506-514	GT	GGG
(AAC)	 AG	563-592	GT	AAG
(CGG)	 AG	668-859	GT	GGG
(GTG)	 AG	880-936	GT	GGG
(AGA)	 AG	970-987	GT	TTG
(AGA)	 AG	1015-1056	GT	GAG
-recovered GeneMark_model.110427_t, internal, 463, 471
-recovered GeneMark_model.110427_t, internal, 506, 514
-recovered GeneMark_model.110427_t, internal, 563, 592
-recovered GeneMark_model.110427_t, internal, 668, 859
-recovered GeneMark_model.110427_t, internal, 880, 936
-recovered GeneMark_model.110427_t, internal, 970, 987
-recovered GeneMark_model.110427_t, internal, 1015, 1056

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1199
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support