-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2567

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1169, 1179
Sorry, prediction GeneMark_model.110426_t fails validation.
(ATG)	 GT	804-860	GT	GAG
(GGA)	 AG	976-986	GT	GAG
(ACA)	 AG	1005-1013	GT	GAG
(ACA)	 AG	1034-1048	GT	GAG
(ACA)	 AG	1081-1089	GT	GAG
(AGT)	 AG	1140-1148	GT	GTG
(AAA)	 AG	1169-1179	GT	GAG
-recovered GeneMark_model.110426_t, initial, 804, 860
-recovered GeneMark_model.110426_t, internal, 976, 986
-recovered GeneMark_model.110426_t, internal, 1005, 1013
-recovered GeneMark_model.110426_t, internal, 1034, 1048
-recovered GeneMark_model.110426_t, internal, 1081, 1089
-recovered GeneMark_model.110426_t, internal, 1140, 1148
-recovered GeneMark_model.110426_t, internal, 1169, 1179

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 501, 713
Couldn't classify 981, 1133
Sorry, prediction snap_scaffold_2567-snap.1-T1 fails validation.
(GCA)	 AG	501-713	GT	AGG
(AGT)	 AG	981-1133	GT	AGG
-recovered snap_scaffold_2567-snap.1-T1, internal, 501, 713
-recovered snap_scaffold_2567-snap.1-T1, internal, 981, 1133
Couldn't classify 501, 735
Sorry, prediction GlimmerHMM_glimmerT_63152-T1 fails validation.
(GCA)	 AG	501-735	GT	AAG
(AGT)	 AG	981-985	GG	AAG
-recovered GlimmerHMM_glimmerT_63152-T1, terminal, 981, 985
-recovered GlimmerHMM_glimmerT_63152-T1, internal, 501, 735
Couldn't classify 501, 713
Couldn't classify 981, 1133
Sorry, prediction Augustus_model.g42114.t1 fails validation.
(GCA)	 AG	501-713	GT	AGG
(AGT)	 AG	981-1133	GT	AGG
-recovered Augustus_model.g42114.t1, internal, 501, 713
-recovered Augustus_model.g42114.t1, internal, 981, 1133
Couldn't classify 981, 1133
Sorry, prediction GeneMark_model.110425_t fails validation.
(ATG)	 TG	478-480	GT	TGG
(GCA)	 AG	501-713	GT	AGG
(AGT)	 AG	981-1133	GT	AGG
-recovered GeneMark_model.110425_t, initial, 478, 480
-recovered GeneMark_model.110425_t, internal, 501, 713
-recovered GeneMark_model.110425_t, internal, 981, 1133

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1201
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support