-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2566

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 191, 818
Couldn't classify 884, 993
Sorry, prediction GeneMark_model.110424_t fails validation.
(ACA)	 AG	191-818	GT	GGG
(CAA)	 AG	884-993	GT	GGG
-recovered GeneMark_model.110424_t, internal, 191, 818
-recovered GeneMark_model.110424_t, internal, 884, 993
Valid prediction for GlimmerHMM_glimmerT_63151-T1
Couldn't classify 195, 357
Sorry, prediction Augustus_model.g42113.t1 fails validation.
(GAA)	 AG	195-357	GT	AGG
-recovered Augustus_model.g42113.t1, internal, 195, 357
Valid prediction for snap_scaffold_2566-snap.1-T1
add_exon() Sorry, snap_scaffold_2566-snap.1-T1 191-822-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1201
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support