-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2565

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 292, 312
Couldn't classify 852, 875
Sorry, prediction GeneMark_model.110423_t fails validation.
(GAT)	 AG	292-312	GT	AAG
(GGA)	 AG	334-342	GT	GAG
(CGA)	 AG	366-449	GT	GGG
(TGA)	 AG	481-489	GT	GAG
(TGA)	 AG	511-519	GT	GAG
(TGA)	 AG	541-549	GT	GAG
(AAG)	 AG	571-594	GT	GAG
(AAC)	 AG	852-875	GT	AGG
-recovered GeneMark_model.110423_t, internal, 292, 312
-recovered GeneMark_model.110423_t, internal, 334, 342
-recovered GeneMark_model.110423_t, internal, 366, 449
-recovered GeneMark_model.110423_t, internal, 481, 489
-recovered GeneMark_model.110423_t, internal, 511, 519
-recovered GeneMark_model.110423_t, internal, 541, 549
-recovered GeneMark_model.110423_t, internal, 571, 594
-recovered GeneMark_model.110423_t, internal, 852, 875

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1202
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support