-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2563

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 328, 579
Couldn't classify 972, 1193
Sorry, prediction GeneMark_model.110422_t fails validation.
(GGT)	 AG	328-579	GT	AGG
(TCA)	 AG	689-833	GT	TGG
(GTG)	 AG	972-1193	GC	CAG
-recovered GeneMark_model.110422_t, internal, 328, 579
-recovered GeneMark_model.110422_t, internal, 689, 833
-recovered GeneMark_model.110422_t, internal, 972, 1193
Couldn't classify 328, 579
Couldn't classify 972, 1095
Sorry, prediction Augustus_model.g42112.t1 fails validation.
(GGT)	 AG	328-579	GT	AGG
(TCA)	 AG	689-833	GT	TGG
(GTG)	 AG	972-1095	GT	AGG
-recovered Augustus_model.g42112.t1, internal, 328, 579
-recovered Augustus_model.g42112.t1, internal, 689, 833
-recovered Augustus_model.g42112.t1, internal, 972, 1095
Couldn't classify 328, 579
Couldn't classify 972, 1095
Sorry, prediction snap_scaffold_2563-snap.1-T1 fails validation.
(GGT)	 AG	328-579	GT	AGG
(TCA)	 AG	689-833	GT	TGG
(GTG)	 AG	972-1095	GT	AGG
-recovered snap_scaffold_2563-snap.1-T1, internal, 328, 579
-recovered snap_scaffold_2563-snap.1-T1, internal, 689, 833
-recovered snap_scaffold_2563-snap.1-T1, internal, 972, 1095
Couldn't classify 328, 579
Sorry, prediction GlimmerHMM_glimmerT_63150-T1 fails validation.
(GGT)	 AG	328-579	GT	AGG
(TCA)	 AG	689-846	GT	GAG
(GTG)	 AG	972-982	CG	AAC
-recovered GlimmerHMM_glimmerT_63150-T1, terminal, 972, 982
-recovered GlimmerHMM_glimmerT_63150-T1, internal, 328, 579
-recovered GlimmerHMM_glimmerT_63150-T1, internal, 689, 846

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1203
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support