-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2561

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 538, 704
Couldn't classify 1170, 1196
Sorry, prediction GeneMark_model.110421_t fails validation.
(TAA)	 AG	538-704	GT	AGG
(GAG)	 AG	767-911	GT	AGG
(AGA)	 AG	939-956	GT	AGG
(AGA)	 AG	984-998	GT	AGG
(AGA)	 AG	1019-1054	GT	GGG
(ATG)	 AG	1077-1097	GT	AGG
(GTG)	 AG	1120-1140	GT	AGG
(AGG)	 AG	1170-1196	GT	AGG
-recovered GeneMark_model.110421_t, initial, 1077, 1097
-recovered GeneMark_model.110421_t, internal, 538, 704
-recovered GeneMark_model.110421_t, internal, 767, 911
-recovered GeneMark_model.110421_t, internal, 939, 956
-recovered GeneMark_model.110421_t, internal, 984, 998
-recovered GeneMark_model.110421_t, internal, 1019, 1054
-recovered GeneMark_model.110421_t, internal, 1077, 1097
-recovered GeneMark_model.110421_t, internal, 1120, 1140
-recovered GeneMark_model.110421_t, internal, 1170, 1196

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1205
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support