-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2560

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 47, 55
Couldn't classify 179, 269
Sorry, prediction GeneMark_model.110420_t fails validation.
(AGG)	 AG	47-55	GT	GAG
(AGG)	 AG	77-154	GT	GAG
(GGA)	 AG	179-269	GT	GAG
-recovered GeneMark_model.110420_t, terminal, 47, 55
add_exon() Sorry, GeneMark_model.110420_t 77-154-terminal-1 is invalid.
-recovered GeneMark_model.110420_t, terminal, 77, 154
-recovered GeneMark_model.110420_t, internal, 47, 55
-recovered GeneMark_model.110420_t, internal, 77, 154
-recovered GeneMark_model.110420_t, internal, 179, 269

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1205
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support