-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_256 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107097_t Valid prediction for GlimmerHMM_glimmerT_61590-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Couldn't classify 343, 833 Sorry, prediction GeneMark_model.107098_t fails validation. (GTG) AG 343-833 GT GGG (GAC) AG 1019-1045 GT AGG (GGC) AG 1131-1142 GT GGG (GTT) AG 1184-1293 GT TGG (GAC) AG 1566-1593 GT GAG (AGC) AG 1642-1729 CG AGC -recovered GeneMark_model.107098_t, terminal, 1642, 1729 -recovered GeneMark_model.107098_t, internal, 343, 833 -recovered GeneMark_model.107098_t, internal, 1019, 1045 -recovered GeneMark_model.107098_t, internal, 1131, 1142 -recovered GeneMark_model.107098_t, internal, 1184, 1293 -recovered GeneMark_model.107098_t, internal, 1566, 1593 Couldn't classify 8545, 8692 Sorry, prediction GeneMark_model.107096_t fails validation. (ATG) GG 3992-4038 GT GTG (GAC) AG 4093-4119 GT AGG (GAC) AG 4221-4368 GT AGG (GGG) AG 4388-4398 GT AGG (GAC) AG 4507-4524 GT GTG (GAC) AG 4777-4882 GT GGG (GAC) AG 5047-5090 GT GGG (GAC) AG 5205-5216 GT AAG (ACA) AG 5255-5290 GT GGG (GCA) AG 5313-5405 GT AGG (GAA) AG 5570-5606 GT GGG (GTG) AG 6280-7308 GT AGG (GTA) AG 7425-7619 GT AGG (ACT) AG 7717-7750 GT CTG (TGG) AG 7779-7796 GT CTG (TGG) AG 7849-7866 GT CTG (TGG) AG 7895-7912 GT CTG (TGG) AG 7941-7958 GT CTG (TGG) AG 8011-8028 GT CTG (TGG) AG 8057-8074 GT CTG (TGG) AG 8127-8144 GT CTG (TGG) AG 8173-8190 GT CTG (TGG) AG 8219-8236 GT CTG (TGG) AG 8265-8282 GT CTG (TGG) AG 8335-8352 GT CTG (TGG) AG 8381-8398 GT CTG (TGG) AG 8427-8444 GT CTG (CAG) AG 8545-8692 GT ACG -recovered GeneMark_model.107096_t, initial, 3992, 4038 -recovered GeneMark_model.107096_t, internal, 4093, 4119 -recovered GeneMark_model.107096_t, internal, 4221, 4368 -recovered GeneMark_model.107096_t, internal, 4388, 4398 -recovered GeneMark_model.107096_t, internal, 4507, 4524 -recovered GeneMark_model.107096_t, internal, 4777, 4882 -recovered GeneMark_model.107096_t, internal, 5047, 5090 -recovered GeneMark_model.107096_t, internal, 5205, 5216 -recovered GeneMark_model.107096_t, internal, 5255, 5290 -recovered GeneMark_model.107096_t, internal, 5313, 5405 -recovered GeneMark_model.107096_t, internal, 5570, 5606 -recovered GeneMark_model.107096_t, internal, 6280, 7308 -recovered GeneMark_model.107096_t, internal, 7425, 7619 -recovered GeneMark_model.107096_t, internal, 7717, 7750 -recovered GeneMark_model.107096_t, internal, 7779, 7796 -recovered GeneMark_model.107096_t, internal, 7849, 7866 -recovered GeneMark_model.107096_t, internal, 7895, 7912 -recovered GeneMark_model.107096_t, internal, 7941, 7958 -recovered GeneMark_model.107096_t, internal, 8011, 8028 -recovered GeneMark_model.107096_t, internal, 8057, 8074 -recovered GeneMark_model.107096_t, internal, 8127, 8144 -recovered GeneMark_model.107096_t, internal, 8173, 8190 -recovered GeneMark_model.107096_t, internal, 8219, 8236 -recovered GeneMark_model.107096_t, internal, 8265, 8282 -recovered GeneMark_model.107096_t, internal, 8335, 8352 -recovered GeneMark_model.107096_t, internal, 8381, 8398 -recovered GeneMark_model.107096_t, internal, 8427, 8444 -recovered GeneMark_model.107096_t, internal, 8545, 8692 Couldn't classify 8541, 8692 Sorry, prediction Augustus_model.g40952.t1 fails validation. (ATG) AG 5381-5392 GT AGG (GTG) AG 6280-7308 GT AGG (GTA) AG 7425-7619 GT AGG (ACA) AG 8541-8692 GT ACG -recovered Augustus_model.g40952.t1, initial, 5381, 5392 -recovered Augustus_model.g40952.t1, internal, 5381, 5392 -recovered Augustus_model.g40952.t1, internal, 6280, 7308 -recovered Augustus_model.g40952.t1, internal, 7425, 7619 -recovered Augustus_model.g40952.t1, internal, 8541, 8692 Couldn't classify 343, 826 Sorry, prediction Augustus_model.g40953.t1 fails validation. (GTG) AG 343-826 GT AGG (AGC) AG 1642-1820 AC AAA -recovered Augustus_model.g40953.t1, terminal, 1642, 1820 -recovered Augustus_model.g40953.t1, internal, 343, 826 Valid prediction for GlimmerHMM_glimmerT_61589-T1 Couldn't classify 343, 826 Sorry, prediction GlimmerHMM_glimmerT_61591-T1 fails validation. (GTG) AG 343-826 GT AGG (AGC) AG 1642-1820 AC AAA -recovered GlimmerHMM_glimmerT_61591-T1, terminal, 1642, 1820 -recovered GlimmerHMM_glimmerT_61591-T1, internal, 343, 826 Couldn't classify 343, 826 Sorry, prediction snap_scaffold_256-snap.1-T1 fails validation. (GTG) AG 343-826 GT AGG (AGC) AG 1642-1796 GT TAG (GTG) AG 6280-7308 GT AGG (GTA) AG 7425-7619 GT AGG (ACA) AG 8541-8753 AT GAA -recovered snap_scaffold_256-snap.1-T1, terminal, 8541, 8753 -recovered snap_scaffold_256-snap.1-T1, internal, 343, 826 -recovered snap_scaffold_256-snap.1-T1, internal, 1642, 1796 -recovered snap_scaffold_256-snap.1-T1, internal, 6280, 7308 -recovered snap_scaffold_256-snap.1-T1, internal, 7425, 7619 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -) -building DP trellis -building trellis in range 1 - 8990 -exon list size: 78 building trellis 1.2 2.5 3.8 5.0 6.2 7.5 8.8 10.0 11.2 12.5 13.8 15.0 16.2 17.5 18.8 20.0 21.2 22.5 23.8 25.0 26.2 27.5 28.7 30.0 31.2 32.5 33.8 35.0 36.2 37.5 38.8 40.0 41.2 42.5 43.8 45.0 46.2 47.5 48.8 50.0 51.2 52.5 53.8 55.0 56.2 57.5 58.8 60.0 61.3 62.5 63.7 65.0 66.2 67.5 68.8 70.0 71.2 72.5 73.8 75.0 76.2 77.5 78.8 80.0 81.2 82.5 83.8 85.0 86.2 87.5 88.8 90.0 91.2 92.5 93.8 95.0 96.2 97.5 98.8 -found 3 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 3 predictions persist after filtering for low support