-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2558

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 40, 607
Couldn't classify 1011, 1180
Sorry, prediction snap_scaffold_2558-snap.1-T1 fails validation.
(TCT)	 AG	40-607	GT	GGG
(GGT)	 AG	698-854	GT	GGG
(GGT)	 AG	1011-1180	GT	GGG
-recovered snap_scaffold_2558-snap.1-T1, internal, 40, 607
-recovered snap_scaffold_2558-snap.1-T1, internal, 698, 854
-recovered snap_scaffold_2558-snap.1-T1, internal, 1011, 1180

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 99, 233
Couldn't classify 998, 1183
Sorry, prediction GeneMark_model.110418_t fails validation.
(ACT)	 AG	99-233	GT	AGG
(ACA)	 AG	256-285	GT	AGG
(ACT)	 AG	347-358	GT	AAG
(ACA)	 AG	581-610	GT	AGG
(ACT)	 AG	633-644	GT	AAG
(ACT)	 AG	712-738	GT	GAG
(ACA)	 AG	803-832	GT	AGG
(ACT)	 AG	881-892	GT	AAG
(ACT)	 AG	998-1183	GC	AGG
-recovered GeneMark_model.110418_t, internal, 99, 233
-recovered GeneMark_model.110418_t, internal, 256, 285
-recovered GeneMark_model.110418_t, internal, 347, 358
-recovered GeneMark_model.110418_t, internal, 581, 610
-recovered GeneMark_model.110418_t, internal, 633, 644
-recovered GeneMark_model.110418_t, internal, 712, 738
-recovered GeneMark_model.110418_t, internal, 803, 832
-recovered GeneMark_model.110418_t, internal, 881, 892
-recovered GeneMark_model.110418_t, internal, 998, 1183
Valid prediction for GlimmerHMM_glimmerT_63149-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1206
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support