-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2557

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_2557-snap.1-T1
Couldn't classify 11, 52
Couldn't classify 554, 661
Sorry, prediction GeneMark_model.110417_t fails validation.
(AGG)	 AG	11-52	GT	AAG
(GAG)	 AG	78-125	GT	AGG
(GAC)	 AG	363-404	GT	GGG
(GAC)	 AG	427-441	GT	TGG
(GAG)	 AG	554-661	GT	GGG
-recovered GeneMark_model.110417_t, internal, 11, 52
-recovered GeneMark_model.110417_t, internal, 78, 125
-recovered GeneMark_model.110417_t, internal, 363, 404
-recovered GeneMark_model.110417_t, internal, 427, 441
-recovered GeneMark_model.110417_t, internal, 554, 661

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1208
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support