-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2556

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 946, 1198
Sorry, prediction snap_scaffold_2556-snap.1-T1 fails validation.
(GCT)	 AG	946-1198	GT	GGG
-recovered snap_scaffold_2556-snap.1-T1, internal, 946, 1198
Couldn't classify 11, 69
Sorry, prediction GeneMark_model.110415_t fails validation.
(TGG)	 AG	11-69	GT	GGG
(AAG)	 AG	302-326	GT	GGG
(GTA)	 AG	354-398	GT	GGG
(GCT)	 AG	424-652	AC	AGA
-recovered GeneMark_model.110415_t, terminal, 424, 652
-recovered GeneMark_model.110415_t, internal, 11, 69
-recovered GeneMark_model.110415_t, internal, 302, 326
-recovered GeneMark_model.110415_t, internal, 354, 398

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 48, 280
Sorry, prediction GeneMark_model.110416_t fails validation.
(CCT)	 AG	48-280	GT	AGG
(GGC)	 AG	359-434	CA	GAC
-recovered GeneMark_model.110416_t, terminal, 359, 434
-recovered GeneMark_model.110416_t, internal, 48, 280
Couldn't classify 1097, 1209
Sorry, prediction Augustus_model.g42111.t1 fails validation.
(ATG)	 GC	1097-1209		CC

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1209
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support