-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2554

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1070, 1152
Sorry, prediction GeneMark_model.110414_t fails validation.
(ATG)	 GG	439-462	GT	CAG
(TAC)	 AG	576-601	GT	AGG
(TGA)	 AG	815-844	GT	GGG
(GGA)	 AG	870-875	GT	GGG
(GGA)	 AG	901-906	GT	GGG
(AGG)	 AG	932-937	GT	GTG
(GGA)	 AG	966-974	GT	AGG
(GGG)	 AG	996-1016	GT	TGG
(CCT)	 AG	1070-1152	GT	AGG
-recovered GeneMark_model.110414_t, initial, 439, 462
-recovered GeneMark_model.110414_t, internal, 576, 601
-recovered GeneMark_model.110414_t, internal, 815, 844
-recovered GeneMark_model.110414_t, internal, 870, 875
-recovered GeneMark_model.110414_t, internal, 901, 906
-recovered GeneMark_model.110414_t, internal, 932, 937
-recovered GeneMark_model.110414_t, internal, 966, 974
-recovered GeneMark_model.110414_t, internal, 996, 1016
-recovered GeneMark_model.110414_t, internal, 1070, 1152

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 75, 200
Couldn't classify 997, 1153
Sorry, prediction Augustus_model.g42110.t1 fails validation.
(GGT)	 AG	75-200	GT	GGG
(GTG)	 AG	997-1153	GT	TGG
-recovered Augustus_model.g42110.t1, internal, 75, 200
-recovered Augustus_model.g42110.t1, internal, 997, 1153
Couldn't classify 997, 1153
Sorry, prediction GeneMark_model.110413_t fails validation.
(ATG)	 GC	806-808	GT	TGG
(GTG)	 AG	997-1153	GT	TGG
-recovered GeneMark_model.110413_t, initial, 806, 808
-recovered GeneMark_model.110413_t, internal, 997, 1153
Couldn't classify 83, 200
Sorry, prediction GlimmerHMM_glimmerT_63148-T1 fails validation.
(TGA)	 AG	83-200	GT	GGG
(GTG)	 AG	997-1075	GT	ATG
(CTA)	 AG	1092-1180	CA	GAC
-recovered GlimmerHMM_glimmerT_63148-T1, terminal, 1092, 1180
-recovered GlimmerHMM_glimmerT_63148-T1, internal, 83, 200
-recovered GlimmerHMM_glimmerT_63148-T1, internal, 997, 1075
Couldn't classify 75, 200
Couldn't classify 997, 1153
Sorry, prediction snap_scaffold_2554-snap.1-T1 fails validation.
(GGT)	 AG	75-200	GT	GGG
(GTG)	 AG	997-1153	GT	TGG
-recovered snap_scaffold_2554-snap.1-T1, internal, 75, 200
-recovered snap_scaffold_2554-snap.1-T1, internal, 997, 1153

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1210
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support