-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2553

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 136, 228
Couldn't classify 697, 756
Sorry, prediction GeneMark_model.110412_t fails validation.
(GAC)	 AG	136-228	GT	CGG
(GTG)	 AG	255-327	GT	TTG
(GAG)	 AG	467-490	GT	AGG
(ACG)	 AG	697-756	GT	CCG
-recovered GeneMark_model.110412_t, internal, 136, 228
-recovered GeneMark_model.110412_t, internal, 255, 327
-recovered GeneMark_model.110412_t, internal, 467, 490
-recovered GeneMark_model.110412_t, internal, 697, 756

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 522, 566
Sorry, prediction snap_scaffold_2553-snap.1-T1 fails validation.
(GTC)	 AG	522-566	GT	AGG
(ACT)	 AG	871-1129	GG	AGG
-recovered snap_scaffold_2553-snap.1-T1, terminal, 871, 1129
-recovered snap_scaffold_2553-snap.1-T1, internal, 522, 566

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1210
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support