-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2552

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_2552-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_63147-T1
Couldn't classify 1024, 1195
Sorry, prediction GeneMark_model.110411_t fails validation.
(ATG)	 GA	434-436	GT	TGG
(ACC)	 AG	713-996	GT	CAG
(AAC)	 AG	1024-1195	GT	CAG
-recovered GeneMark_model.110411_t, initial, 434, 436
-recovered GeneMark_model.110411_t, internal, 713, 996
-recovered GeneMark_model.110411_t, internal, 1024, 1195

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1210
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support