-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2551

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63146-T1
Couldn't classify 232, 243
Couldn't classify 1051, 1063
Sorry, prediction GeneMark_model.110410_t fails validation.
(GAG)	 AG	232-243	GT	AGG
(GAA)	 AG	270-296	GT	GGG
(AGA)	 AG	332-538	GT	AAG
(ACA)	 AG	646-665	GT	GCG
(GAG)	 AG	700-751	GT	GAG
(AGC)	 AG	780-923	GT	ACG
(GAG)	 AG	1024-1029	GT	TGG
(TAA)	 AG	1051-1063	GT	TGG
-recovered GeneMark_model.110410_t, internal, 232, 243
-recovered GeneMark_model.110410_t, internal, 270, 296
-recovered GeneMark_model.110410_t, internal, 332, 538
-recovered GeneMark_model.110410_t, internal, 646, 665
-recovered GeneMark_model.110410_t, internal, 700, 751
-recovered GeneMark_model.110410_t, internal, 780, 923
-recovered GeneMark_model.110410_t, internal, 1024, 1029
-recovered GeneMark_model.110410_t, internal, 1051, 1063

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1210
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support