-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_255

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61586-T1
Valid prediction for GeneMark_model.107094_t
Couldn't classify 651, 824
Sorry, prediction Augustus_model.g40951.t1 fails validation.
(TCG)	 AG	651-824	GT	GCG
(AGG)	 AG	1446-1584	GT	AGG
(GTG)	 AG	1965-2081	GT	TGG
(GTG)	 AG	2155-2293	GT	TGG
(AGG)	 AG	2429-2619	GT	GTG
(AAC)	 AG	4057-4127	GT	AGG
(GTA)	 AG	4724-4815	GT	AGG
(GTA)	 AG	5245-5257	GT	TGG
(GTA)	 AG	5517-5520	CT	AAC
-recovered Augustus_model.g40951.t1, terminal, 5517, 5520
-recovered Augustus_model.g40951.t1, internal, 651, 824
-recovered Augustus_model.g40951.t1, internal, 1446, 1584
-recovered Augustus_model.g40951.t1, internal, 1965, 2081
-recovered Augustus_model.g40951.t1, internal, 2155, 2293
-recovered Augustus_model.g40951.t1, internal, 2429, 2619
-recovered Augustus_model.g40951.t1, internal, 4057, 4127
-recovered Augustus_model.g40951.t1, internal, 4724, 4815
-recovered Augustus_model.g40951.t1, internal, 5245, 5257
Valid prediction for snap_scaffold_255-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 8198, 8380
Sorry, prediction GeneMark_model.107093_t fails validation.
(ATG)	 AG	6855-6935	GT	AGG
(GAG)	 AG	7036-7055	GT	AGG
(AGG)	 AG	7085-7102	GT	TTG
(GAG)	 AG	7123-7140	GT	ATG
(AGA)	 AG	7167-7181	GT	AAG
(AGT)	 AG	7420-7477	GT	AGG
(CTG)	 AG	7500-7552	GT	CTG
(GGA)	 AG	7582-7728	GC	AAG
(AAT)	 AG	7765-7818	GT	TGG
(GAG)	 AG	7845-7922	GT	GTG
(TGC)	 AG	8198-8380	GT	AGG
-recovered GeneMark_model.107093_t, initial, 6855, 6935
-recovered GeneMark_model.107093_t, internal, 6855, 6935
-recovered GeneMark_model.107093_t, internal, 7036, 7055
-recovered GeneMark_model.107093_t, internal, 7085, 7102
-recovered GeneMark_model.107093_t, internal, 7123, 7140
-recovered GeneMark_model.107093_t, internal, 7167, 7181
-recovered GeneMark_model.107093_t, internal, 7420, 7477
-recovered GeneMark_model.107093_t, internal, 7500, 7552
-recovered GeneMark_model.107093_t, internal, 7582, 7728
-recovered GeneMark_model.107093_t, internal, 7765, 7818
-recovered GeneMark_model.107093_t, internal, 7845, 7922
-recovered GeneMark_model.107093_t, internal, 8198, 8380
Valid prediction for GlimmerHMM_glimmerT_61588-T1
Valid prediction for GlimmerHMM_glimmerT_61587-T1
Valid prediction for snap_scaffold_255-snap.2-T1
Valid prediction for GeneMark_model.107095_t
Valid prediction for snap_scaffold_255-snap.3-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8718, rend_intergenic: 1243  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 8995
-exon list size: 70


building trellis

1.4    
2.8    
4.2    
5.6    
6.9    
8.3    
9.7    
11.1    
12.5    
13.9    
15.3    
16.7    
18.1    
19.4    
20.8    
22.2    
23.6    
25.0    
26.4    
27.8    
29.2    
30.6    
31.9    
33.3    
34.7    
36.1    
37.5    
38.9    
40.3    
41.7    
43.1    
44.4    
45.8    
47.2    
48.6    
50.0    
51.4    
52.8    
54.2    
55.6    
56.9    
58.3    
59.7    
61.1    
62.5    
63.9    
65.3    
66.7    
68.1    
69.4    
70.8    
72.2    
73.6    
75.0    
76.4    
77.8    
79.2    
80.6    
81.9    
83.3    
84.7    
86.1    
87.5    
88.9    
90.3    
91.7    
93.1    
94.4    
95.8    
97.2    
98.6    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 8718, rend_intergenic: 1243  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support