-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2544

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 96, 200
Couldn't classify 702, 767
Sorry, prediction snap_scaffold_2544-snap.1-T1 fails validation.
(AAA)	 AG	96-200	GT	AGG
(TGA)	 AG	548-653	GT	GGG
(GGA)	 AG	702-767	GT	AGG
-recovered snap_scaffold_2544-snap.1-T1, internal, 96, 200
-recovered snap_scaffold_2544-snap.1-T1, internal, 548, 653
-recovered snap_scaffold_2544-snap.1-T1, internal, 702, 767
Couldn't classify 37, 87
Couldn't classify 1032, 1097
Sorry, prediction GeneMark_model.110407_t fails validation.
(AGA)	 AG	37-87	GT	CTG
(TGA)	 AG	548-653	GT	GGG
(GGA)	 AG	698-840	GT	GGG
(AGA)	 AG	864-890	GT	AAG
(GCG)	 AG	1032-1097	GT	GGG
-recovered GeneMark_model.110407_t, internal, 37, 87
-recovered GeneMark_model.110407_t, internal, 548, 653
-recovered GeneMark_model.110407_t, internal, 698, 840
-recovered GeneMark_model.110407_t, internal, 864, 890
-recovered GeneMark_model.110407_t, internal, 1032, 1097

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1213
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support