-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2543

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 199, 381
Sorry, prediction Augustus_model.g42107.t1 fails validation.
(ACC)	 AG	199-381	GT	CGG
-recovered Augustus_model.g42107.t1, internal, 199, 381
Couldn't classify 199, 381
Sorry, prediction snap_scaffold_2543-snap.1-T1 fails validation.
(ACC)	 AG	199-381	GT	CGG
-recovered snap_scaffold_2543-snap.1-T1, internal, 199, 381
Couldn't classify 199, 381
Sorry, prediction GeneMark_model.110406_t fails validation.
(ACC)	 AG	199-381	GT	CGG
-recovered GeneMark_model.110406_t, internal, 199, 381

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1214
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support