-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2540

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.110403_t
Couldn't classify 566, 998
Sorry, prediction snap_scaffold_2540-snap.1-T1 fails validation.
(TCT)	 AG	566-998	GT	GGG
-recovered snap_scaffold_2540-snap.1-T1, internal, 566, 998

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1079, 1096
Sorry, prediction GeneMark_model.110402_t fails validation.
(ATG)	 AC	488-496	GT	GCG
(CCT)	 AG	583-677	GT	GGG
(GAA)	 AG	708-743	GT	GAG
(GAA)	 AG	762-773	GT	AGG
(GAG)	 AG	841-906	GT	AGG
(GGA)	 AG	1079-1096	GT	AGG
-recovered GeneMark_model.110402_t, initial, 488, 496
-recovered GeneMark_model.110402_t, internal, 583, 677
-recovered GeneMark_model.110402_t, internal, 708, 743
-recovered GeneMark_model.110402_t, internal, 762, 773
-recovered GeneMark_model.110402_t, internal, 841, 906
-recovered GeneMark_model.110402_t, internal, 1079, 1096

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1214
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support