-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2539

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 64, 119
Couldn't classify 1072, 1192
Sorry, prediction GeneMark_model.110401_t fails validation.
(GGA)	 AG	64-119	GT	CAG
(GTG)	 AG	176-223	GT	GGG
(GGA)	 AG	319-324	GT	GGG
(GAC)	 AG	348-386	GT	GGG
(TGG)	 AG	510-630	GT	AAG
(GAG)	 AG	878-900	GT	AGG
(TGA)	 AG	936-944	GT	CAG
(GGC)	 AG	966-1037	GT	CAG
(TGG)	 AG	1072-1192	GC	ATG
-recovered GeneMark_model.110401_t, internal, 64, 119
-recovered GeneMark_model.110401_t, internal, 176, 223
-recovered GeneMark_model.110401_t, internal, 319, 324
-recovered GeneMark_model.110401_t, internal, 348, 386
-recovered GeneMark_model.110401_t, internal, 510, 630
-recovered GeneMark_model.110401_t, internal, 878, 900
-recovered GeneMark_model.110401_t, internal, 936, 944
-recovered GeneMark_model.110401_t, internal, 966, 1037
-recovered GeneMark_model.110401_t, internal, 1072, 1192
Couldn't classify 96, 175
Couldn't classify 480, 630
Sorry, prediction snap_scaffold_2539-snap.1-T1 fails validation.
(GAT)	 AG	96-175	GT	AGG
(AGA)	 AG	480-630	GT	AAG
-recovered snap_scaffold_2539-snap.1-T1, internal, 96, 175
-recovered snap_scaffold_2539-snap.1-T1, internal, 480, 630

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1217
-exon list size: 23


building trellis

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28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support