-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2538

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_63144-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63144-T1 876-1039-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 66, 164
Sorry, prediction GeneMark_model.110400_t fails validation.
(AGA)	 AG	66-164	GT	TTG
(GAA)	 AG	374-469	GT	AAG
(AAG)	 AG	492-762	GA	AAG
-recovered GeneMark_model.110400_t, terminal, 492, 762
-recovered GeneMark_model.110400_t, internal, 66, 164
-recovered GeneMark_model.110400_t, internal, 374, 469
Valid prediction for snap_scaffold_2538-snap.1-T1
add_exon() Sorry, snap_scaffold_2538-snap.1-T1 337-754-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1219
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support