-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2536

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 27, 50
Sorry, prediction GeneMark_model.110399_t fails validation.
(TGA)	 AG	27-50	GT	GAG
(GAG)	 AG	108-113	GT	AGG
(AGG)	 AG	138-146	GT	GAG
(GAG)	 AG	183-212	GT	GAG
(GGA)	 AG	457-498	GC	GAG
(AGA)	 AG	534-643	GT	TGG
(CCC)	 AG	952-1012	GT	GAG
add_exon() Sorry, GeneMark_model.110399_t 952-1012-terminal-3 is invalid.
-recovered GeneMark_model.110399_t, terminal, 952, 1012
-recovered GeneMark_model.110399_t, internal, 27, 50
-recovered GeneMark_model.110399_t, internal, 108, 113
-recovered GeneMark_model.110399_t, internal, 138, 146
-recovered GeneMark_model.110399_t, internal, 183, 212
-recovered GeneMark_model.110399_t, internal, 457, 498
-recovered GeneMark_model.110399_t, internal, 534, 643
-recovered GeneMark_model.110399_t, internal, 952, 1012

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1221
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support