-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2533

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 23, 34
Sorry, prediction GeneMark_model.110396_t fails validation.
(GGG)	 AG	23-34	GT	GAG
(GAG)	 AG	175-403	AG	AGA
-recovered GeneMark_model.110396_t, terminal, 175, 403
-recovered GeneMark_model.110396_t, internal, 23, 34

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 59, 212
Couldn't classify 1061, 1138
Sorry, prediction pasa_asmbl_34624.p1 fails validation.
(GTG)	 AG	59-212	GT	CTG
(TGA)	 AG	617-714	GT	TTG
(CCT)	 AG	1061-1138	TG	GTT
-recovered pasa_asmbl_34624.p1, internal, 59, 212
-recovered pasa_asmbl_34624.p1, internal, 617, 714
Couldn't classify 59, 190
Couldn't classify 1061, 1139
Sorry, prediction snap_scaffold_2533-snap.1-T1 fails validation.
(GTG)	 AG	59-190	GT	ACG
(TCT)	 AG	235-331	GT	CGG
(TGA)	 AG	617-714	GT	TTG
(CCT)	 AG	1061-1139	GT	TTG
-recovered snap_scaffold_2533-snap.1-T1, internal, 59, 190
-recovered snap_scaffold_2533-snap.1-T1, internal, 235, 331
-recovered snap_scaffold_2533-snap.1-T1, internal, 617, 714
-recovered snap_scaffold_2533-snap.1-T1, internal, 1061, 1139
Couldn't classify 59, 208
Sorry, prediction GeneMark_model.110397_t fails validation.
(GTG)	 AG	59-208	GT	TCG
(TCT)	 AG	235-351	AG	AAA
-recovered GeneMark_model.110397_t, terminal, 235, 351
-recovered GeneMark_model.110397_t, internal, 59, 208
Couldn't classify 59, 212
Couldn't classify 1061, 1139
Sorry, prediction Augustus_model.g42105.t1 fails validation.
(GTG)	 AG	59-212	GT	CTG
(TGA)	 AG	617-714	GT	TTG
(CCT)	 AG	1061-1139	GT	TTG
-recovered Augustus_model.g42105.t1, internal, 59, 212
-recovered Augustus_model.g42105.t1, internal, 617, 714
-recovered Augustus_model.g42105.t1, internal, 1061, 1139
Valid prediction for GlimmerHMM_glimmerT_63143-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1223
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support