-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2532

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 122, 356
Sorry, prediction Augustus_model.g42104.t1 fails validation.
(AGA)	 AG	122-356	GT	AGG
-recovered Augustus_model.g42104.t1, internal, 122, 356
Valid prediction for GlimmerHMM_glimmerT_63142-T1
Couldn't classify 124, 433
Couldn't classify 565, 627
Sorry, prediction GeneMark_model.110395_t fails validation.
(AGG)	 AG	124-433	GT	GGG
(AGG)	 AG	535-543	GT	GGG
(GGC)	 AG	565-627	GT	GGG
-recovered GeneMark_model.110395_t, internal, 124, 433
-recovered GeneMark_model.110395_t, internal, 535, 543
-recovered GeneMark_model.110395_t, internal, 565, 627
Couldn't classify 122, 419
Sorry, prediction snap_scaffold_2532-snap.1-T1 fails validation.
(AGA)	 AG	122-419	GT	GGG
-recovered snap_scaffold_2532-snap.1-T1, internal, 122, 419

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1223
-exon list size: 8


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support