-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_253

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_253-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 378, 506
Sorry, prediction GeneMark_model.107087_t fails validation.
(AGC)	 AG	378-506	GT	AGG
(AAG)	 AG	583-597	AC	GAA
-recovered GeneMark_model.107087_t, terminal, 583, 597
-recovered GeneMark_model.107087_t, internal, 378, 506
Valid prediction for snap_scaffold_253-snap.1-T1
Couldn't classify 296, 506
Sorry, prediction GlimmerHMM_glimmerT_61584-T1 fails validation.
(CTC)	 AG	296-506	GT	AGG
(GTT)	 AG	6614-6706	GG	AAG
-recovered GlimmerHMM_glimmerT_61584-T1, terminal, 6614, 6706
-recovered GlimmerHMM_glimmerT_61584-T1, internal, 296, 506
Valid prediction for Augustus_model.g40950.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 9000
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support