-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2528

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 136, 340
Sorry, prediction snap_scaffold_2528-snap.1-T1 fails validation.
(GGA)	 AG	136-340	GT	ACG
-recovered snap_scaffold_2528-snap.1-T1, internal, 136, 340
Couldn't classify 136, 168
Couldn't classify 1189, 1197
Sorry, prediction GeneMark_model.110392_t fails validation.
(GGA)	 AG	136-168	GT	GAG
(GAG)	 AG	195-233	GT	GAG
(GAA)	 AG	258-356	GT	GAG
(AGA)	 AG	594-725	GT	GGG
(GGG)	 AG	749-793	GT	GGG
(GGG)	 AG	817-947	GT	CAG
(TCT)	 AG	1006-1087	GT	GAG
(TGA)	 AG	1112-1120	GT	GAG
(ATG)	 AG	1147-1158	GT	GAG
(ATG)	 AG	1189-1197	GC	AGG
-recovered GeneMark_model.110392_t, initial, 1147, 1158
-recovered GeneMark_model.110392_t, initial, 1189, 1197
-recovered GeneMark_model.110392_t, internal, 136, 168
-recovered GeneMark_model.110392_t, internal, 195, 233
-recovered GeneMark_model.110392_t, internal, 258, 356
-recovered GeneMark_model.110392_t, internal, 594, 725
-recovered GeneMark_model.110392_t, internal, 749, 793
-recovered GeneMark_model.110392_t, internal, 817, 947
-recovered GeneMark_model.110392_t, internal, 1006, 1087
-recovered GeneMark_model.110392_t, internal, 1112, 1120
-recovered GeneMark_model.110392_t, internal, 1147, 1158
-recovered GeneMark_model.110392_t, internal, 1189, 1197

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1226
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support