-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2524

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 29, 87
Sorry, prediction GeneMark_model.110390_t fails validation.
(GCC)	 AG	29-87	GT	CTG
(GAT)	 AG	108-125	GT	GGG
(AGA)	 AG	293-640	GT	CAG
(GGA)	 AG	662-691	GT	GGG
(AAA)	 AG	723-803	GT	CAG
(GGA)	 AG	827-874	GT	GGG
(ATA)	 AG	902-905	AG	AAA
-recovered GeneMark_model.110390_t, terminal, 902, 905
-recovered GeneMark_model.110390_t, internal, 29, 87
-recovered GeneMark_model.110390_t, internal, 108, 125
-recovered GeneMark_model.110390_t, internal, 293, 640
-recovered GeneMark_model.110390_t, internal, 662, 691
-recovered GeneMark_model.110390_t, internal, 723, 803
-recovered GeneMark_model.110390_t, internal, 827, 874

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1227
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support