-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2522

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 945, 1116
Sorry, prediction GlimmerHMM_glimmerT_63141-T1 fails validation.
(ATG)	 AC	808-839	GT	GGG
(CAC)	 AG	945-1116	GT	GGG
-recovered GlimmerHMM_glimmerT_63141-T1, initial, 808, 839
-recovered GlimmerHMM_glimmerT_63141-T1, internal, 945, 1116

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 118, 321
Couldn't classify 440, 537
Sorry, prediction GeneMark_model.110389_t fails validation.
(CCC)	 AG	118-321	GT	GGG
(AGA)	 AG	440-537	GT	TGG
-recovered GeneMark_model.110389_t, internal, 118, 321
-recovered GeneMark_model.110389_t, internal, 440, 537
Couldn't classify 118, 321
Couldn't classify 440, 537
Sorry, prediction snap_scaffold_2522-snap.1-T1 fails validation.
(CCC)	 AG	118-321	GT	GGG
(AGA)	 AG	440-537	GT	TGG
-recovered snap_scaffold_2522-snap.1-T1, internal, 118, 321
-recovered snap_scaffold_2522-snap.1-T1, internal, 440, 537
Couldn't classify 440, 537
Sorry, prediction Augustus_model.g42102.t1 fails validation.
(AGA)	 AG	440-537	GT	TGG
-recovered Augustus_model.g42102.t1, internal, 440, 537

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1228
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support