-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2520

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 28, 33
Sorry, prediction GeneMark_model.110388_t fails validation.
(AGA)	 AG	28-33	GT	AGG
(AGG)	 AG	56-67	GT	AGG
(AGG)	 AG	90-119	GT	AGG
(GGG)	 AG	144-155	GT	AGG
(GGA)	 AG	180-185	GT	AGG
(TGC)	 AG	212-217	GT	AGG
(AGG)	 AG	240-257	GT	AGG
(AGA)	 AG	286-291	GT	AGG
(AGA)	 AG	316-321	GT	AGG
(GGG)	 AG	346-369	GT	AGG
(GTG)	 AG	394-411	GT	AGG
(AGA)	 AG	434-439	GT	AGG
(AGA)	 AG	462-467	GT	AGG
(AGG)	 AG	500-511	GT	AGG
(TTG)	 AG	532-544	GT	ATG
(CTG)	 AG	578-607	GT	GAG
-recovered GeneMark_model.110388_t, terminal, 578, 607
-recovered GeneMark_model.110388_t, internal, 28, 33
-recovered GeneMark_model.110388_t, internal, 56, 67
-recovered GeneMark_model.110388_t, internal, 90, 119
-recovered GeneMark_model.110388_t, internal, 144, 155
-recovered GeneMark_model.110388_t, internal, 180, 185
-recovered GeneMark_model.110388_t, internal, 212, 217
-recovered GeneMark_model.110388_t, internal, 240, 257
-recovered GeneMark_model.110388_t, internal, 286, 291
-recovered GeneMark_model.110388_t, internal, 316, 321
-recovered GeneMark_model.110388_t, internal, 346, 369
-recovered GeneMark_model.110388_t, internal, 394, 411
-recovered GeneMark_model.110388_t, internal, 434, 439
-recovered GeneMark_model.110388_t, internal, 462, 467
-recovered GeneMark_model.110388_t, internal, 500, 511
-recovered GeneMark_model.110388_t, internal, 532, 544
-recovered GeneMark_model.110388_t, internal, 578, 607

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 197, 382
Couldn't classify 653, 691
Sorry, prediction Augustus_model.g42101.t1 fails validation.
(ATC)	 AG	197-382	GT	AGG
(CTG)	 AG	653-691	GT	AGG
-recovered Augustus_model.g42101.t1, internal, 197, 382
-recovered Augustus_model.g42101.t1, internal, 653, 691
Couldn't classify 197, 382
Sorry, prediction snap_scaffold_2520-snap.1-T1 fails validation.
(ATC)	 AG	197-382	GT	AGG
-recovered snap_scaffold_2520-snap.1-T1, internal, 197, 382

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1229
-exon list size: 42


building trellis

2.3    
4.5    
6.8    
9.1    
11.4    
13.6    
15.9    
18.2    
20.5    
22.7    
25.0    
27.3    
29.5    
31.8    
34.1    
36.4    
38.6    
40.9    
43.2    
45.5    
47.7    
50.0    
52.3    
54.5    
56.8    
59.1    
61.4    
63.6    
65.9    
68.2    
70.5    
72.7    
75.0    
77.3    
79.5    
81.8    
84.1    
86.4    
88.6    
90.9    
93.2    
95.5    
97.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support