-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2519

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 412, 548
Sorry, prediction Augustus_model.g42100.t1 fails validation.
(TGA)	 AG	412-548	GT	AGG
(TGA)	 AG	806-909	AA	AGA
-recovered Augustus_model.g42100.t1, terminal, 806, 909
-recovered Augustus_model.g42100.t1, internal, 412, 548
Valid prediction for GlimmerHMM_glimmerT_63140-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63140-T1 412-595-terminal-1 is invalid.
Valid prediction for snap_scaffold_2519-snap.1-T1
add_exon() Sorry, snap_scaffold_2519-snap.1-T1 412-595-terminal-1 is invalid.
Couldn't classify 1165, 1175
Sorry, prediction GeneMark_model.110387_t fails validation.
(ATG)	 AA	919-929	GT	AAG
(AGA)	 AG	967-1038	GT	GAG
(AGA)	 AG	1068-1142	GT	ATG
(GAA)	 AG	1165-1175	GC	GAG
-recovered GeneMark_model.110387_t, initial, 919, 929
-recovered GeneMark_model.110387_t, internal, 967, 1038
-recovered GeneMark_model.110387_t, internal, 1068, 1142
-recovered GeneMark_model.110387_t, internal, 1165, 1175

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1165, 1173
Sorry, prediction GeneMark_model.110386_t fails validation.
(ATG)	 TC	733-791	GT	AAG
(ACA)	 AG	828-839	GT	GGG
(GAT)	 AG	1013-1135	GT	TGG
(GGA)	 AG	1165-1173	GT	GAG
-recovered GeneMark_model.110386_t, initial, 733, 791
-recovered GeneMark_model.110386_t, internal, 828, 839
-recovered GeneMark_model.110386_t, internal, 1013, 1135
-recovered GeneMark_model.110386_t, internal, 1165, 1173

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1230
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support