-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2518

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_2518-snap.2-T1
Valid prediction for snap_scaffold_2518-snap.1-T1
add_exon() Sorry, snap_scaffold_2518-snap.1-T1 481-728-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_63139-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63139-T1 481-728-terminal-1 is invalid.
Couldn't classify 1031, 1197
Sorry, prediction GeneMark_model.110385_t fails validation.
(ATG)	 AC	561-708	GT	AGG
(ATG)	 AG	1031-1197	GC	GGG
-recovered GeneMark_model.110385_t, initial, 561, 708
add_exon() Sorry, GeneMark_model.110385_t 1031-1197-initial-1 is invalid.
-recovered GeneMark_model.110385_t, initial, 1031, 1197
-recovered GeneMark_model.110385_t, internal, 1031, 1197
Couldn't classify 481, 708
Couldn't classify 1031, 1156
Sorry, prediction Augustus_model.g42099.t1 fails validation.
(ACA)	 AG	481-708	GT	AGG
(ATG)	 AG	1031-1156	GT	TGG
add_exon() Sorry, Augustus_model.g42099.t1 1031-1156-initial-1 is invalid.
-recovered Augustus_model.g42099.t1, initial, 1031, 1156
-recovered Augustus_model.g42099.t1, internal, 481, 708
-recovered Augustus_model.g42099.t1, internal, 1031, 1156

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1230
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support