-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_251

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1395, 1609
Sorry, prediction Augustus_model.g40948.t1 fails validation.
(TCG)	 AG	1395-1609	GT	AGG
(GTG)	 AG	2454-2588	GA	GAG
-recovered Augustus_model.g40948.t1, terminal, 2454, 2588
-recovered Augustus_model.g40948.t1, internal, 1395, 1609
Couldn't classify 1395, 1609
Couldn't classify 2454, 2553
Sorry, prediction snap_scaffold_251-snap.2-T1 fails validation.
(TCG)	 AG	1395-1609	GT	AGG
(GTG)	 AG	2454-2553	GT	ATG
-recovered snap_scaffold_251-snap.2-T1, internal, 1395, 1609
-recovered snap_scaffold_251-snap.2-T1, internal, 2454, 2553

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_251-snap.5-T1
add_exon() Sorry, snap_scaffold_251-snap.5-T1 1776-1986-terminal-1 is invalid.
Couldn't classify 7934, 8272
Sorry, prediction snap_scaffold_251-snap.1-T1 fails validation.
(ATG)	 GC	6889-6894	GT	AGG
(GCA)	 AG	7496-7597	GT	GCG
(GAG)	 AG	7934-8272	GT	AGG
-recovered snap_scaffold_251-snap.1-T1, initial, 6889, 6894
-recovered snap_scaffold_251-snap.1-T1, internal, 7496, 7597
-recovered snap_scaffold_251-snap.1-T1, internal, 7934, 8272
Valid prediction for GlimmerHMM_glimmerT_61579-T1
Couldn't classify 145, 185
Sorry, prediction GeneMark_model.107083_t fails validation.
(ACT)	 AG	145-185	GT	AGG
(GGA)	 AG	499-531	GT	GGG
(AGA)	 AG	553-585	GT	GGG
(AGG)	 AG	613-621	GT	GAG
(AGA)	 AG	643-663	GT	GGG
(GGA)	 AG	697-723	GT	GGG
(AGA)	 AG	747-768	GA	AAG
-recovered GeneMark_model.107083_t, terminal, 747, 768
-recovered GeneMark_model.107083_t, internal, 145, 185
-recovered GeneMark_model.107083_t, internal, 499, 531
-recovered GeneMark_model.107083_t, internal, 553, 585
-recovered GeneMark_model.107083_t, internal, 613, 621
-recovered GeneMark_model.107083_t, internal, 643, 663
-recovered GeneMark_model.107083_t, internal, 697, 723
Valid prediction for GlimmerHMM_glimmerT_61580-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61580-T1 2213-3146-terminal-1 is invalid.
Valid prediction for snap_scaffold_251-snap.3-T1
Valid prediction for GeneMark_model.107082_t
Valid prediction for snap_scaffold_251-snap.4-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2149, rend_intergenic: 1395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 2553, rend_intergenic: 2181  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9037
-exon list size: 73


building trellis

1.3    
2.7    
4.0    
5.3    
6.7    
8.0    
9.3    
10.7    
12.0    
13.3    
14.7    
16.0    
17.3    
18.7    
20.0    
21.3    
22.7    
24.0    
25.3    
26.7    
28.0    
29.3    
30.7    
32.0    
33.3    
34.7    
36.0    
37.3    
38.7    
40.0    
41.3    
42.7    
44.0    
45.3    
46.7    
48.0    
49.3    
50.7    
52.0    
53.3    
54.7    
56.0    
57.3    
58.7    
60.0    
61.3    
62.7    
64.0    
65.3    
66.7    
68.0    
69.3    
70.7    
72.0    
73.3    
74.7    
76.0    
77.3    
78.7    
80.0    
81.3    
82.7    
84.0    
85.3    
86.7    
88.0    
89.3    
90.7    
92.0    
93.3    
94.7    
96.0    
97.3    
98.7    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 2149, rend_intergenic: 1395  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 2553, rend_intergenic: 2181  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support