-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2509

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 33, 132
Couldn't classify 1174, 1182
Sorry, prediction GeneMark_model.110381_t fails validation.
(AGA)	 AG	33-132	GT	AGG
(GCC)	 AG	188-339	GT	GAG
(CAA)	 AG	1050-1068	GT	AGG
(GTG)	 AG	1104-1112	GT	TGG
(GTG)	 AG	1139-1147	GT	TGG
(GTG)	 AG	1174-1182	GT	TGG
-recovered GeneMark_model.110381_t, internal, 33, 132
-recovered GeneMark_model.110381_t, internal, 188, 339
-recovered GeneMark_model.110381_t, internal, 1050, 1068
-recovered GeneMark_model.110381_t, internal, 1104, 1112
-recovered GeneMark_model.110381_t, internal, 1139, 1147
-recovered GeneMark_model.110381_t, internal, 1174, 1182

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1235
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support