-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2508

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 131, 258
Couldn't classify 303, 471
Sorry, prediction snap_scaffold_2508-snap.1-T1 fails validation.
(AGG)	 AG	131-258	GT	CGG
(GGC)	 AG	303-471	GT	CTG
-recovered snap_scaffold_2508-snap.1-T1, internal, 131, 258
-recovered snap_scaffold_2508-snap.1-T1, internal, 303, 471
Couldn't classify 73, 99
Couldn't classify 1169, 1228
Sorry, prediction GeneMark_model.110380_t fails validation.
(GCT)	 AG	73-99	GT	GGG
(GAG)	 AG	133-258	GT	CGG
(GGC)	 AG	303-433	GT	CCG
(GGA)	 AG	527-635	GT	GAG
(GCT)	 AG	1169-1228	GC	AGG
-recovered GeneMark_model.110380_t, internal, 73, 99
-recovered GeneMark_model.110380_t, internal, 133, 258
-recovered GeneMark_model.110380_t, internal, 303, 433
-recovered GeneMark_model.110380_t, internal, 527, 635
-recovered GeneMark_model.110380_t, internal, 1169, 1228

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1238
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support