-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_250

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 44, 117
Sorry, prediction Augustus_model.g40947.t1 fails validation.
(GGC)	 AG	44-117	GT	GGG
(GCA)	 AG	763-915	GT	TGG
(ACG)	 AG	1311-1547	GT	AGG
(AAT)	 AG	6170-6174	AC	GAA
-recovered Augustus_model.g40947.t1, terminal, 6170, 6174
-recovered Augustus_model.g40947.t1, internal, 44, 117
-recovered Augustus_model.g40947.t1, internal, 763, 915
-recovered Augustus_model.g40947.t1, internal, 1311, 1547
Couldn't classify 30, 117
Sorry, prediction snap_scaffold_250-snap.1-T1 fails validation.
(GTC)	 AG	30-117	GT	GGG
(GCA)	 AG	763-915	GT	TGG
(ACG)	 AG	1311-1547	GT	AGG
(CTC)	 AG	5446-5807	CT	AGC
-recovered snap_scaffold_250-snap.1-T1, terminal, 5446, 5807
-recovered snap_scaffold_250-snap.1-T1, internal, 30, 117
-recovered snap_scaffold_250-snap.1-T1, internal, 763, 915
-recovered snap_scaffold_250-snap.1-T1, internal, 1311, 1547
Valid prediction for GeneMark_model.107080_t
Couldn't classify 44, 117
Sorry, prediction GeneMark_model.107079_t fails validation.
(GGC)	 AG	44-117	GT	GGG
(GCA)	 AG	763-915	GT	TGG
(ACG)	 AG	1311-1527	GC	CTG
(GTG)	 AG	1548-1551	GG	GAG
-recovered GeneMark_model.107079_t, terminal, 1548, 1551
-recovered GeneMark_model.107079_t, internal, 44, 117
-recovered GeneMark_model.107079_t, internal, 763, 915
-recovered GeneMark_model.107079_t, internal, 1311, 1527
Couldn't classify 8561, 8975
Sorry, prediction GeneMark_model.107081_t fails validation.
(ATG)	 GA	7805-7809	GT	AAG
(GGA)	 AG	7841-7864	GT	AGG
(AGA)	 AG	7887-7898	GT	AGG
(GGA)	 AG	8289-8489	GC	CAG
(TCA)	 AG	8517-8537	GT	GAG
(AGA)	 AG	8561-8975	GT	AGG
-recovered GeneMark_model.107081_t, initial, 7805, 7809
-recovered GeneMark_model.107081_t, internal, 7841, 7864
-recovered GeneMark_model.107081_t, internal, 7887, 7898
-recovered GeneMark_model.107081_t, internal, 8289, 8489
-recovered GeneMark_model.107081_t, internal, 8517, 8537
-recovered GeneMark_model.107081_t, internal, 8561, 8975
Couldn't classify 6338, 6426
Sorry, prediction GlimmerHMM_glimmerT_61578-T1 fails validation.
(ATG)	 AG	804-915	GT	TGG
(ACG)	 AG	1311-1547	GT	AGG
(AGA)	 AG	6338-6426	GT	AGG
-recovered GlimmerHMM_glimmerT_61578-T1, initial, 804, 915
-recovered GlimmerHMM_glimmerT_61578-T1, internal, 804, 915
-recovered GlimmerHMM_glimmerT_61578-T1, internal, 1311, 1547
-recovered GlimmerHMM_glimmerT_61578-T1, internal, 6338, 6426

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_250-snap.2-T1
add_exon() Sorry, snap_scaffold_250-snap.2-T1 2613-2661-initial-1 is invalid.
add_exon() Sorry, snap_scaffold_250-snap.2-T1 7530-7748-terminal-2 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5807, rend_intergenic: 1322  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 9069
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5807, rend_intergenic: 1322  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support