-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_25/scaffold_25_8929894-9133983

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_56077-T1
Valid prediction for CodingQuarry_transcript_38737-T1
Valid prediction for snap_scaffold_25-snap.1994-T1
Couldn't classify 51839, 51860
Sorry, prediction GeneMark_model.97690_t fails validation.
(ATG)	 GG	45204-45381	GT	GGG
(GTT)	 AG	45416-45473	GT	GCG
(GTG)	 AG	45573-45591	GT	ATG
(TCC)	 AG	47016-47246	GT	CAG
(CTG)	 AG	47311-47659	GT	GGG
(GTC)	 AG	48188-48415	GT	CGG
(GCT)	 AG	48438-48597	GT	CGG
(TCT)	 AG	48734-48784	GT	GCG
(ATG)	 AG	49389-49400	GT	AAG
(GGA)	 AG	49446-49463	GC	GGG
(ACT)	 AG	49488-49493	GC	AGG
(ACT)	 AG	49518-49523	GC	AGG
(ACT)	 AG	49546-49551	GC	AGG
(ACT)	 AG	49576-49581	GC	AGG
(AGG)	 AG	49604-49708	GT	CCG
(ACA)	 AG	50028-50574	GT	AGG
(GAC)	 AG	50601-50608	GT	CTG
(GGT)	 AG	51839-51860	GT	AGG
-recovered GeneMark_model.97690_t, initial, 45204, 45381
add_exon() Sorry, GeneMark_model.97690_t 49389-49400-initial-1 is invalid.
-recovered GeneMark_model.97690_t, initial, 49389, 49400
-recovered GeneMark_model.97690_t, internal, 45416, 45473
-recovered GeneMark_model.97690_t, internal, 45573, 45591
-recovered GeneMark_model.97690_t, internal, 47016, 47246
-recovered GeneMark_model.97690_t, internal, 47311, 47659
-recovered GeneMark_model.97690_t, internal, 48188, 48415
-recovered GeneMark_model.97690_t, internal, 48438, 48597
-recovered GeneMark_model.97690_t, internal, 48734, 48784
-recovered GeneMark_model.97690_t, internal, 49389, 49400
-recovered GeneMark_model.97690_t, internal, 49446, 49463
-recovered GeneMark_model.97690_t, internal, 49488, 49493
-recovered GeneMark_model.97690_t, internal, 49518, 49523
-recovered GeneMark_model.97690_t, internal, 49546, 49551
-recovered GeneMark_model.97690_t, internal, 49576, 49581
-recovered GeneMark_model.97690_t, internal, 49604, 49708
-recovered GeneMark_model.97690_t, internal, 50028, 50574
-recovered GeneMark_model.97690_t, internal, 50601, 50608
-recovered GeneMark_model.97690_t, internal, 51839, 51860
Valid prediction for HiQ_model.g37399.t1
Valid prediction for GlimmerHMM_glimmerT_56070-T1
Valid prediction for Augustus_model.g37397.t1
Couldn't classify 69210, 69386
Sorry, prediction GeneMark_model.97691_t fails validation.
(GCC)	 AG	69210-69386	GT	CGG
(GTA)	 AG	69771-69897	GT	AAG
(CAC)	 AG	70765-70846	GT	AGG
(CTG)	 AG	70927-70965	GC	AAG
-recovered GeneMark_model.97691_t, terminal, 70927, 70965
-recovered GeneMark_model.97691_t, internal, 69210, 69386
-recovered GeneMark_model.97691_t, internal, 69771, 69897
-recovered GeneMark_model.97691_t, internal, 70765, 70846
-recovered GeneMark_model.97691_t, internal, 70927, 70965
Valid prediction for GeneMark_model.97713_t
Valid prediction for GlimmerHMM_glimmerT_56067-T1
Valid prediction for GlimmerHMM_glimmerT_56074-T1
Valid prediction for pasa_asmbl_33764.p2
Valid prediction for GlimmerHMM_glimmerT_56080-T1
Valid prediction for GlimmerHMM_glimmerT_56073-T1
Valid prediction for GlimmerHMM_glimmerT_56092-T1
Valid prediction for snap_scaffold_25-snap.1977-T1
Valid prediction for Augustus_model.g37393.t1
Valid prediction for GeneMark_model.97705_t
Valid prediction for Augustus_model.g37388.t1
Valid prediction for Augustus_model.g37389.t1
Valid prediction for pasa_asmbl_33771.p1
Valid prediction for GeneMark_model.97719_t
Valid prediction for CodingQuarry_transcript_38738-T1
Valid prediction for GeneMark_model.97708_t
Valid prediction for HiQ_model.g37402.t1
Valid prediction for snap_scaffold_25-snap.2015-T1
Valid prediction for GeneMark_model.97703_t
Valid prediction for snap_scaffold_25-snap.1972-T1
Valid prediction for snap_scaffold_25-snap.1981-T1
Valid prediction for GlimmerHMM_glimmerT_56087-T1
Valid prediction for pasa_asmbl_33767.p1
Valid prediction for snap_scaffold_25-snap.2001-T1
Valid prediction for snap_scaffold_25-snap.2005-T1
Valid prediction for GlimmerHMM_glimmerT_56065-T1
Valid prediction for GeneMark_model.97698_t
Valid prediction for GlimmerHMM_glimmerT_56083-T1
Valid prediction for GlimmerHMM_glimmerT_56086-T1
Valid prediction for snap_scaffold_25-snap.2000-T1
Valid prediction for Augustus_model.g37386.t1
Valid prediction for snap_scaffold_25-snap.1979-T1
Couldn't classify 154732, 155124
Sorry, prediction pasa_asmbl_33769.p1 fails validation.
(AAC)	 AG	154732-155124	AC	GGA
Valid prediction for snap_scaffold_25-snap.2017-T1
Valid prediction for GeneMark_model.97706_t
Valid prediction for snap_scaffold_25-snap.2012-T1
Valid prediction for GlimmerHMM_glimmerT_56064-T1
Valid prediction for GlimmerHMM_glimmerT_56072-T1
Valid prediction for snap_scaffold_25-snap.2003-T1
Valid prediction for snap_scaffold_25-snap.1973-T1
Valid prediction for GeneMark_model.97709_t
Valid prediction for GlimmerHMM_glimmerT_56088-T1
Valid prediction for HiQ_model.g37394.t1
Valid prediction for snap_scaffold_25-snap.1983-T1
Valid prediction for GlimmerHMM_glimmerT_56085-T1
Valid prediction for snap_scaffold_25-snap.1990-T1
Valid prediction for GlimmerHMM_glimmerT_56060-T1
Valid prediction for snap_scaffold_25-snap.1997-T1
Valid prediction for GlimmerHMM_glimmerT_56094-T1
Valid prediction for GlimmerHMM_glimmerT_56069-T1
Valid prediction for GlimmerHMM_glimmerT_56095-T1
Valid prediction for pasa_asmbl_33775.p1
Valid prediction for GeneMark_model.97712_t
Valid prediction for GeneMark_model.97718_t
Valid prediction for snap_scaffold_25-snap.2004-T1
Valid prediction for snap_scaffold_25-snap.2008-T1
Valid prediction for CodingQuarry_transcript_38739-T1
Valid prediction for GeneMark_model.97696_t
Valid prediction for GlimmerHMM_glimmerT_56089-T1
Valid prediction for snap_scaffold_25-snap.1975-T1
Couldn't classify 152866, 152934
Couldn't classify 153847, 154314
Sorry, prediction pasa_asmbl_33768.p1 fails validation.
(CAG)	 CA	152866-152934	GT	AGG
(GCA)	 AG	153129-153212	GT	AGG
(AAC)	 AG	153318-153425	GT	AGG
(GCT)	 AG	153526-153624	GT	AGG
(ATG)	 AG	153847-154314	AT	GGA
-recovered pasa_asmbl_33768.p1, internal, 153129, 153212
-recovered pasa_asmbl_33768.p1, internal, 153318, 153425
-recovered pasa_asmbl_33768.p1, internal, 153526, 153624
Couldn't classify 69209, 69386
Couldn't classify 72901, 73024
Sorry, prediction pasa_asmbl_33892.p1 fails validation.
(GGC)	 CA	69209-69386	GT	CGG
(GTA)	 AG	69771-69897	GT	AAG
(GGG)	 AG	72583-72696	GT	AGG
(TTT)	 AG	72901-73024	GG	CAG
-recovered pasa_asmbl_33892.p1, internal, 69771, 69897
-recovered pasa_asmbl_33892.p1, internal, 72583, 72696
Valid prediction for GeneMark_model.97688_t
Valid prediction for snap_scaffold_25-snap.1988-T1
Valid prediction for snap_scaffold_25-snap.1991-T1
Valid prediction for GlimmerHMM_glimmerT_56081-T1
Valid prediction for GeneMark_model.97685_t
Valid prediction for GeneMark_model.97687_t
Couldn't classify 89196, 89318
Couldn't classify 93152, 93215
Sorry, prediction pasa_asmbl_33912.p1 fails validation.
(ACG)	 CC	89196-89318	GT	AGG
(ACT)	 AG	89578-89646	GT	AAG
(AAA)	 AG	89771-89928	GT	AGG
(GAT)	 AG	90183-90304	GT	AGG
(ATG)	 AG	92128-92189	GT	TTG
(CCA)	 AG	92298-92378	GT	ATG
(GTG)	 AG	92686-92745	GT	AGG
(GTG)	 AG	92893-92954	GT	CAG
(TAT)	 AG	93152-93215	GT	AGG
add_exon() Sorry, pasa_asmbl_33912.p1 92128-92189-initial-1 is invalid.
-recovered pasa_asmbl_33912.p1, initial, 92128, 92189
-recovered pasa_asmbl_33912.p1, internal, 89578, 89646
-recovered pasa_asmbl_33912.p1, internal, 89771, 89928
-recovered pasa_asmbl_33912.p1, internal, 90183, 90304
-recovered pasa_asmbl_33912.p1, internal, 92128, 92189
-recovered pasa_asmbl_33912.p1, internal, 92298, 92378
-recovered pasa_asmbl_33912.p1, internal, 92686, 92745
-recovered pasa_asmbl_33912.p1, internal, 92893, 92954
-recovered pasa_asmbl_33912.p1, internal, 93152, 93215
Couldn't classify 82717, 82860
Couldn't classify 84696, 84813
Sorry, prediction pasa_asmbl_33761.p1 fails validation.
(GCG)	 GA	82717-82860	GT	AGG
(GGA)	 AG	83282-83363	GT	AGG
(TGT)	 AG	83609-83711	GT	AGG
(GTA)	 AG	84696-84813	GG	GAG
-recovered pasa_asmbl_33761.p1, internal, 83282, 83363
-recovered pasa_asmbl_33761.p1, internal, 83609, 83711
Couldn't classify 156464, 159709
Sorry, prediction pasa_asmbl_33770.p1 fails validation.
(AAG)	 TG	156464-159709	GA	AAG
Valid prediction for snap_scaffold_25-snap.2006-T1
Valid prediction for GlimmerHMM_glimmerT_56078-T1
Valid prediction for snap_scaffold_25-snap.1986-T1
Valid prediction for GlimmerHMM_glimmerT_56068-T1
Valid prediction for GeneMark_model.97721_t
Valid prediction for snap_scaffold_25-snap.1985-T1
Valid prediction for snap_scaffold_25-snap.1999-T1
Valid prediction for Augustus_model.g37398.t1
Valid prediction for GeneMark_model.97714_t
Valid prediction for CodingQuarry_transcript_38740-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g37395.t1
Valid prediction for GeneMark_model.97716_t
Valid prediction for GeneMark_model.97701_t
Valid prediction for GlimmerHMM_glimmerT_56061-T1
Valid prediction for snap_scaffold_25-snap.2010-T1
Valid prediction for snap_scaffold_25-snap.2016-T1
Valid prediction for GeneMark_model.97686_t
Valid prediction for GlimmerHMM_glimmerT_56084-T1
Valid prediction for snap_scaffold_25-snap.1982-T1
Valid prediction for GeneMark_model.97693_t
Valid prediction for GlimmerHMM_glimmerT_56063-T1
Valid prediction for snap_scaffold_25-snap.1995-T1
Valid prediction for HiQ_model.g37392.t1
Valid prediction for GeneMark_model.97707_t
Valid prediction for GeneMark_model.97683_t
Valid prediction for GlimmerHMM_glimmerT_56075-T1
Valid prediction for GlimmerHMM_glimmerT_56062-T1
Valid prediction for GeneMark_model.97689_t
Valid prediction for snap_scaffold_25-snap.1996-T1
Valid prediction for snap_scaffold_25-snap.1974-T1
Valid prediction for GeneMark_model.97711_t
Valid prediction for GeneMark_model.97717_t
Valid prediction for Augustus_model.g37385.t1
Valid prediction for GeneMark_model.97715_t
Valid prediction for GlimmerHMM_glimmerT_56079-T1
Valid prediction for Augustus_model.g37387.t1
Valid prediction for snap_scaffold_25-snap.1992-T1
Valid prediction for snap_scaffold_25-snap.2002-T1
Valid prediction for GeneMark_model.97720_t
Valid prediction for GlimmerHMM_glimmerT_56093-T1
Valid prediction for snap_scaffold_25-snap.1978-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for Augustus_model.g37400.t1
Valid prediction for Augustus_model.g37391.t1
Valid prediction for pasa_asmbl_34447.p1
Valid prediction for GeneMark_model.97700_t
Valid prediction for Augustus_model.g37403.t1
Valid prediction for snap_scaffold_25-snap.1998-T1
Valid prediction for snap_scaffold_25-snap.1976-T1
Valid prediction for GeneMark_model.97704_t
Valid prediction for Augustus_model.g37396.t1
Valid prediction for snap_scaffold_25-snap.2007-T1
Valid prediction for snap_scaffold_25-snap.1989-T1
Valid prediction for snap_scaffold_25-snap.1980-T1
Valid prediction for snap_scaffold_25-snap.2009-T1
Valid prediction for GlimmerHMM_glimmerT_56059-T1
Valid prediction for GeneMark_model.97699_t
Valid prediction for snap_scaffold_25-snap.1987-T1
Valid prediction for snap_scaffold_25-snap.2011-T1
Valid prediction for GeneMark_model.97694_t
Valid prediction for GlimmerHMM_glimmerT_56082-T1
Valid prediction for snap_scaffold_25-snap.1993-T1
Valid prediction for GeneMark_model.97684_t
Valid prediction for GlimmerHMM_glimmerT_56096-T1
Valid prediction for GeneMark_model.97692_t
Valid prediction for GlimmerHMM_glimmerT_56066-T1
Valid prediction for GlimmerHMM_glimmerT_56076-T1
Valid prediction for GeneMark_model.97695_t
Valid prediction for GeneMark_model.97710_t
Valid prediction for Augustus_model.g37390.t1
Valid prediction for Augustus_model.g37401.t1
Valid prediction for snap_scaffold_25-snap.2014-T1
Valid prediction for GlimmerHMM_glimmerT_56091-T1
Valid prediction for snap_scaffold_25-snap.1971-T1
Valid prediction for GlimmerHMM_glimmerT_56090-T1
Valid prediction for GeneMark_model.97702_t
Valid prediction for snap_scaffold_25-snap.2013-T1
Valid prediction for GlimmerHMM_glimmerT_56071-T1
Valid prediction for GeneMark_model.97697_t
Valid prediction for CodingQuarry_transcript_38736-T1
Valid prediction for snap_scaffold_25-snap.1984-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9546, rend_intergenic: 3285  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17465, rend_intergenic: 14398  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19401, rend_intergenic: 18255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20816, rend_intergenic: 19502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29780, rend_intergenic: 24131  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31918, rend_intergenic: 30542  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41529, rend_intergenic: 37285  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44776, rend_intergenic: 42925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48740, rend_intergenic: 45204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74105, rend_intergenic: 48815  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78523, rend_intergenic: 75998  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102724, rend_intergenic: 81781  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110053, rend_intergenic: 106302  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139174, rend_intergenic: 126919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146130, rend_intergenic: 140951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176381, rend_intergenic: 168033  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191606, rend_intergenic: 188827  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196844, rend_intergenic: 193890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 204090
-exon list size: 737


building trellis

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48.2    
48.3    
48.4    
48.6    
48.7    
48.8    
49.0    
49.1    
49.3    
49.4    
49.5    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.5    
50.6    
50.7    
50.9    
51.0    
51.2    
51.3    
51.4    
51.6    
51.7    
51.8    
52.0    
52.1    
52.2    
52.4    
52.5    
52.6    
52.8    
52.9    
53.0    
53.2    
53.3    
53.5    
53.6    
53.7    
53.9    
54.0    
54.1    
54.3    
54.4    
54.5    
54.7    
54.8    
54.9    
55.1    
55.2    
55.3    
55.5    
55.6    
55.8    
55.9    
56.0    
56.2    
56.3    
56.4    
56.6    
56.7    
56.8    
57.0    
57.1    
57.2    
57.4    
57.5    
57.6    
57.8    
57.9    
58.1    
58.2    
58.3    
58.5    
58.6    
58.7    
58.9    
59.0    
59.1    
59.3    
59.4    
59.5    
59.7    
59.8    
59.9    
60.1    
60.2    
60.4    
60.5    
60.6    
60.8    
60.9    
61.0    
61.2    
61.3    
61.4    
61.6    
61.7    
61.8    
62.0    
62.1    
62.2    
62.4    
62.5    
62.7    
62.8    
62.9    
63.1    
63.2    
63.3    
63.5    
63.6    
63.7    
63.9    
64.0    
64.1    
64.3    
64.4    
64.5    
64.7    
64.8    
65.0    
65.1    
65.2    
65.4    
65.5    
65.6    
65.8    
65.9    
66.0    
66.2    
66.3    
66.4    
66.6    
66.7    
66.8    
67.0    
67.1    
67.3    
67.4    
67.5    
67.7    
67.8    
67.9    
68.1    
68.2    
68.3    
68.5    
68.6    
68.7    
68.9    
69.0    
69.1    
69.3    
69.4    
69.6    
69.7    
69.8    
70.0    
70.1    
70.2    
70.4    
70.5    
70.6    
70.8    
70.9    
71.0    
71.2    
71.3    
71.4    
71.6    
71.7    
71.9    
72.0    
72.1    
72.3    
72.4    
72.5    
72.7    
72.8    
72.9    
73.1    
73.2    
73.3    
73.5    
73.6    
73.7    
73.9    
74.0    
74.2    
74.3    
74.4    
74.6    
74.7    
74.8    
75.0    
75.1    
75.2    
75.4    
75.5    
75.6    
75.8    
75.9    
76.0    
76.2    
76.3    
76.5    
76.6    
76.7    
76.9    
77.0    
77.1    
77.3    
77.4    
77.5    
77.7    
77.8    
77.9    
78.1    
78.2    
78.3    
78.5    
78.6    
78.8    
78.9    
79.0    
79.2    
79.3    
79.4    
79.6    
79.7    
79.8    
80.0    
80.1    
80.2    
80.4    
80.5    
80.6    
80.8    
80.9    
81.1    
81.2    
81.3    
81.5    
81.6    
81.7    
81.9    
82.0    
82.1    
82.3    
82.4    
82.5    
82.7    
82.8    
82.9    
83.1    
83.2    
83.4    
83.5    
83.6    
83.8    
83.9    
84.0    
84.2    
84.3    
84.4    
84.6    
84.7    
84.8    
85.0    
85.1    
85.3    
85.4    
85.5    
85.7    
85.8    
85.9    
86.1    
86.2    
86.3    
86.5    
86.6    
86.7    
86.9    
87.0    
87.1    
87.3    
87.4    
87.6    
87.7    
87.8    
88.0    
88.1    
88.2    
88.4    
88.5    
88.6    
88.8    
88.9    
89.0    
89.2    
89.3    
89.4    
89.6    
89.7    
89.9    
90.0    
90.1    
90.3    
90.4    
90.5    
90.7    
90.8    
90.9    
91.1    
91.2    
91.3    
91.5    
91.6    
91.7    
91.9    
92.0    
92.2    
92.3    
92.4    
92.6    
92.7    
92.8    
93.0    
93.1    
93.2    
93.4    
93.5    
93.6    
93.8    
93.9    
94.0    
94.2    
94.3    
94.5    
94.6    
94.7    
94.9    
95.0    
95.1    
95.3    
95.4    
95.5    
95.7    
95.8    
95.9    
96.1    
96.2    
96.3    
96.5    
96.6    
96.8    
96.9    
97.0    
97.2    
97.3    
97.4    
97.6    
97.7    
97.8    
98.0    
98.1    
98.2    
98.4    
98.5    
98.6    
98.8    
98.9    
99.1    
99.2    
99.3    
99.5    
99.6    
99.7    
99.9    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 9546, rend_intergenic: 3285  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 17465, rend_intergenic: 14398  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19401, rend_intergenic: 18255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20816, rend_intergenic: 19502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29780, rend_intergenic: 24131  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31918, rend_intergenic: 30542  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41529, rend_intergenic: 37285  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44776, rend_intergenic: 42925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48740, rend_intergenic: 45204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74105, rend_intergenic: 48815  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78523, rend_intergenic: 75998  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102724, rend_intergenic: 81781  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 110053, rend_intergenic: 106302  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 139174, rend_intergenic: 126919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146130, rend_intergenic: 140951  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176381, rend_intergenic: 168033  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191606, rend_intergenic: 188827  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196844, rend_intergenic: 193890  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 18930
-exon list size: 47


building trellis

2.0    
4.1    
6.1    
8.2    
10.2    
12.2    
14.3    
16.3    
18.4    
20.4    
22.4    
24.5    
26.5    
28.6    
30.6    
32.7    
34.7    
36.7    
38.8    
40.8    
42.9    
44.9    
46.9    
49.0    
51.0    
53.1    
55.1    
57.1    
59.2    
61.2    
63.3    
65.3    
67.3    
69.4    
71.4    
73.5    
75.5    
77.6    
79.6    
81.6    
83.7    
85.7    
87.8    
89.8    
91.8    
93.9    
95.9    
98.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 13795
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support