-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_25/scaffold_25_8673257-8933177

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_56043-T1
Valid prediction for GlimmerHMM_glimmerT_56033-T1
Valid prediction for GeneMark_model.97662_t
Valid prediction for GeneMark_model.97669_t
Valid prediction for Augustus_model.g37375.t1
Valid prediction for HiQ_model.g37368.t1
Valid prediction for snap_scaffold_25-snap.1950-T1
Valid prediction for GeneMark_model.97664_t
Valid prediction for Augustus_model.g37371.t1
Valid prediction for GlimmerHMM_glimmerT_56052-T1
Valid prediction for snap_scaffold_25-snap.1938-T1
Valid prediction for Augustus_model.g37362.t1
Valid prediction for GeneMark_model.97663_t
Valid prediction for GlimmerHMM_glimmerT_56020-T1
Valid prediction for snap_scaffold_25-snap.1931-T1
Valid prediction for GlimmerHMM_glimmerT_56019-T1
Valid prediction for GeneMark_model.97677_t
Valid prediction for CodingQuarry_transcript_38734-T1
Couldn't classify 58909, 59073
Couldn't classify 59170, 59388
Sorry, prediction pasa_asmbl_33866.p1 fails validation.
(GTT)	 AT	58909-59073	GT	AGG
(GTG)	 AG	59170-59388	TC	AGT
Valid prediction for GeneMark_model.97629_t
Valid prediction for snap_scaffold_25-snap.1959-T1
Valid prediction for GlimmerHMM_glimmerT_56054-T1
Couldn't classify 61514, 61718
Couldn't classify 62761, 63102
Sorry, prediction pasa_asmbl_33756.p1 fails validation.
(GTG)	 GT	61514-61718	GT	AGG
(GGT)	 AG	62041-62204	GT	AGG
(GCT)	 AG	62301-62426	GT	CTG
(GAT)	 AG	62523-62654	GT	TGG
(CTC)	 AG	62761-63102	TG	GAT
-recovered pasa_asmbl_33756.p1, internal, 62041, 62204
-recovered pasa_asmbl_33756.p1, internal, 62301, 62426
-recovered pasa_asmbl_33756.p1, internal, 62523, 62654
Valid prediction for snap_scaffold_25-snap.1942-T1
Valid prediction for pasa_asmbl_33754.p1
Valid prediction for GeneMark_model.97631_t
Valid prediction for GlimmerHMM_glimmerT_56037-T1
Valid prediction for snap_scaffold_25-snap.1932-T1
Valid prediction for snap_scaffold_25-snap.1947-T1
Valid prediction for snap_scaffold_25-snap.1963-T1
Valid prediction for snap_scaffold_25-snap.1928-T1
Valid prediction for GeneMark_model.97638_t
Valid prediction for snap_scaffold_25-snap.1945-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for snap_scaffold_25-snap.1957-T1
Valid prediction for GlimmerHMM_glimmerT_56028-T1
Valid prediction for HiQ_model.g37370.t1
Valid prediction for GlimmerHMM_glimmerT_56051-T1
Valid prediction for CodingQuarry_transcript_38735-T1
Valid prediction for snap_scaffold_25-snap.1956-T1
Valid prediction for Augustus_model.g37376.t1
Valid prediction for CodingQuarry_transcript_38733-T1
Valid prediction for GeneMark_model.97660_t
Valid prediction for GlimmerHMM_glimmerT_56048-T1
Valid prediction for GeneMark_model.97640_t
Valid prediction for snap_scaffold_25-snap.1924-T1
Valid prediction for GeneMark_model.97649_t
Couldn't classify 60926, 61423
Sorry, prediction pasa_asmbl_33755.p1 fails validation.
(TGG)	 CA	60926-61423	GA	GTG
Valid prediction for GlimmerHMM_glimmerT_56045-T1
Valid prediction for GeneMark_model.97666_t
Couldn't classify 5064, 5149
Sorry, prediction pasa_asmbl_33741.p1 fails validation.
(GTC)	 CG	5064-5149	GT	AGG
(GAG)	 AG	6541-6713	GT	AGG
(GTG)	 AG	7123-7319	CC	AGC
-recovered pasa_asmbl_33741.p1, terminal, 7123, 7319
-recovered pasa_asmbl_33741.p1, internal, 6541, 6713
Valid prediction for GlimmerHMM_glimmerT_56046-T1
Valid prediction for Augustus_model.g37380.t1
Valid prediction for CodingQuarry_transcript_38731-T1
Valid prediction for snap_scaffold_25-snap.1933-T1
Valid prediction for GlimmerHMM_glimmerT_56040-T1
Valid prediction for GeneMark_model.97642_t
Valid prediction for GeneMark_model.97632_t
Valid prediction for GlimmerHMM_glimmerT_56047-T1
Valid prediction for Augustus_model.g37381.t1
Valid prediction for GeneMark_model.97653_t
Valid prediction for snap_scaffold_25-snap.1951-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for pasa_asmbl_33749.p1
Valid prediction for GlimmerHMM_glimmerT_56024-T1
Valid prediction for GeneMark_model.97674_t
Valid prediction for GeneMark_model.97647_t
Valid prediction for HiQ_model.g37373.t1
Valid prediction for GeneMark_model.97681_t
Valid prediction for GlimmerHMM_glimmerT_56042-T1
Valid prediction for snap_scaffold_25-snap.1936-T1
Valid prediction for GlimmerHMM_glimmerT_56025-T1
Valid prediction for snap_scaffold_25-snap.1969-T1
Valid prediction for GeneMark_model.97626_t
Valid prediction for GlimmerHMM_glimmerT_56023-T1
Valid prediction for GlimmerHMM_glimmerT_56015-T1
Valid prediction for GeneMark_model.97672_t
Valid prediction for GeneMark_model.97658_t
Valid prediction for Augustus_model.g37377.t1
Valid prediction for GeneMark_model.97645_t
Valid prediction for pasa_asmbl_33757.p1
Valid prediction for GlimmerHMM_glimmerT_56050-T1
Valid prediction for GlimmerHMM_glimmerT_56035-T1
Valid prediction for GlimmerHMM_glimmerT_56038-T1
Valid prediction for snap_scaffold_25-snap.1955-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.97641_t
Valid prediction for snap_scaffold_25-snap.1937-T1
Valid prediction for CodingQuarry_transcript_38729-T1
Valid prediction for GlimmerHMM_glimmerT_56022-T1
Valid prediction for GeneMark_model.97659_t
Valid prediction for GlimmerHMM_glimmerT_56044-T1
Valid prediction for GlimmerHMM_glimmerT_56026-T1
Valid prediction for GeneMark_model.97650_t
Couldn't classify 191722, 192786
Sorry, prediction pasa_asmbl_34440.p1 fails validation.
(GAG)	 AA	191722-192786	GG	AGG
Valid prediction for GlimmerHMM_glimmerT_56034-T1
Valid prediction for Augustus_model.g37367.t1
Valid prediction for snap_scaffold_25-snap.1940-T1
Valid prediction for CodingQuarry_transcript_38730-T1
Valid prediction for GeneMark_model.97643_t
Valid prediction for GlimmerHMM_glimmerT_56056-T1
Valid prediction for GlimmerHMM_glimmerT_56032-T1
Valid prediction for GlimmerHMM_glimmerT_56049-T1
Valid prediction for GeneMark_model.97637_t
Valid prediction for snap_scaffold_25-snap.1965-T1
Valid prediction for GeneMark_model.97675_t
Valid prediction for Augustus_model.g37384.t1
Valid prediction for snap_scaffold_25-snap.1925-T1
Valid prediction for GeneMark_model.97630_t
Valid prediction for GlimmerHMM_glimmerT_56016-T1
Valid prediction for snap_scaffold_25-snap.1944-T1
Valid prediction for GlimmerHMM_glimmerT_56029-T1
Valid prediction for GeneMark_model.97678_t
Valid prediction for snap_scaffold_25-snap.1935-T1
Valid prediction for Augustus_model.g37379.t1
Valid prediction for GlimmerHMM_glimmerT_56055-T1
Valid prediction for pasa_asmbl_34433.p1
Valid prediction for GeneMark_model.97665_t
Valid prediction for snap_scaffold_25-snap.1939-T1
Valid prediction for GeneMark_model.97668_t
Valid prediction for snap_scaffold_25-snap.1968-T1
Valid prediction for HiQ_model.g37369.t1
Valid prediction for HiQ_model.g37364.t1
Valid prediction for GeneMark_model.97633_t
Valid prediction for CodingQuarry_transcript_38732-T1
Valid prediction for GlimmerHMM_glimmerT_56041-T1
Couldn't classify 245806, 245975
Couldn't classify 246221, 246315
Sorry, prediction pasa_asmbl_34429.p1 fails validation.
(ATG)	 AG	245264-245298	GT	GGG
(TGA)	 AG	245806-245975	AT	CAA
(GTA)	 AC	246221-246315	GT	TGG
(GAA)	 AG	246480-246542	GT	AGG
(GCT)	 AG	246644-246772	GT	AGG
(CTC)	 AG	246945-247051	GT	GTG
(GAT)	 AG	247159-247253	GT	CGG
(ATC)	 AG	247559-247635	TG	GAT
-recovered pasa_asmbl_34429.p1, initial, 245264, 245298
-recovered pasa_asmbl_34429.p1, terminal, 247559, 247635
-recovered pasa_asmbl_34429.p1, internal, 245264, 245298
-recovered pasa_asmbl_34429.p1, internal, 246480, 246542
-recovered pasa_asmbl_34429.p1, internal, 246644, 246772
-recovered pasa_asmbl_34429.p1, internal, 246945, 247051
-recovered pasa_asmbl_34429.p1, internal, 247159, 247253
Valid prediction for snap_scaffold_25-snap.1967-T1
Valid prediction for GeneMark_model.97634_t
Valid prediction for GeneMark_model.97636_t
Valid prediction for GlimmerHMM_glimmerT_56030-T1
Valid prediction for GlimmerHMM_glimmerT_56039-T1
Valid prediction for GlimmerHMM_glimmerT_56021-T1
Valid prediction for snap_scaffold_25-snap.1949-T1
Valid prediction for GlimmerHMM_glimmerT_56027-T1
Valid prediction for snap_scaffold_25-snap.1952-T1
Valid prediction for GlimmerHMM_glimmerT_56053-T1
Valid prediction for GeneMark_model.97656_t
Valid prediction for snap_scaffold_25-snap.1926-T1
Valid prediction for snap_scaffold_25-snap.1927-T1
Valid prediction for GeneMark_model.97667_t
Valid prediction for GeneMark_model.97654_t
Valid prediction for GeneMark_model.97628_t
Valid prediction for Augustus_model.g37383.t1
Valid prediction for GeneMark_model.97670_t
Valid prediction for GeneMark_model.97671_t
Valid prediction for Augustus_model.g37365.t1
Valid prediction for GeneMark_model.97627_t
Valid prediction for snap_scaffold_25-snap.1970-T1
Valid prediction for snap_scaffold_25-snap.1941-T1
Valid prediction for pasa_asmbl_34438.p1
Valid prediction for snap_scaffold_25-snap.1934-T1
Valid prediction for GeneMark_model.97661_t
Valid prediction for GeneMark_model.97679_t
Valid prediction for Augustus_model.g37382.t1
Valid prediction for GeneMark_model.97646_t
Valid prediction for GeneMark_model.97639_t
Valid prediction for snap_scaffold_25-snap.1966-T1
Valid prediction for GeneMark_model.97655_t
Valid prediction for snap_scaffold_25-snap.1943-T1
Couldn't classify 115555, 115733
Sorry, prediction GeneMark_model.97651_t fails validation.
(GCA)	 AG	115555-115733	GT	ATG
(GGA)	 AG	115760-116095	GT	CGG
(GTT)	 AG	118085-118151	GT	GGG
(CGC)	 AG	118997-119217	GT	GGG
(GGA)	 AG	119242-119289	GT	AAG
(GAA)	 AG	120524-120574	GT	AAG
(GTC)	 AG	120625-120645	GT	GGG
(CTT)	 AG	121531-121548	GT	AGG
(GAC)	 AG	121752-121874	GT	GTG
(AGA)	 AG	121897-121920	GT	CGG
(AGA)	 AG	121971-122598	GT	TGG
(TCC)	 AG	122742-122809	GT	AAG
(GGA)	 AG	122864-122968	GT	AGG
(GGA)	 AG	122989-123000	GT	AGG
(GAA)	 AG	123033-123345	GC	AAG
-recovered GeneMark_model.97651_t, terminal, 123033, 123345
-recovered GeneMark_model.97651_t, internal, 115555, 115733
-recovered GeneMark_model.97651_t, internal, 115760, 116095
-recovered GeneMark_model.97651_t, internal, 118085, 118151
-recovered GeneMark_model.97651_t, internal, 118997, 119217
-recovered GeneMark_model.97651_t, internal, 119242, 119289
-recovered GeneMark_model.97651_t, internal, 120524, 120574
-recovered GeneMark_model.97651_t, internal, 120625, 120645
-recovered GeneMark_model.97651_t, internal, 121531, 121548
-recovered GeneMark_model.97651_t, internal, 121752, 121874
-recovered GeneMark_model.97651_t, internal, 121897, 121920
-recovered GeneMark_model.97651_t, internal, 121971, 122598
-recovered GeneMark_model.97651_t, internal, 122742, 122809
-recovered GeneMark_model.97651_t, internal, 122864, 122968
-recovered GeneMark_model.97651_t, internal, 122989, 123000
-recovered GeneMark_model.97651_t, internal, 123033, 123345
Valid prediction for GlimmerHMM_glimmerT_56017-T1
Valid prediction for GeneMark_model.97682_t
Valid prediction for GeneMark_model.97673_t
Valid prediction for snap_scaffold_25-snap.1948-T1
Valid prediction for snap_scaffold_25-snap.1954-T1
Valid prediction for Augustus_model.g37378.t1
Valid prediction for Augustus_model.g37374.t1
Valid prediction for GlimmerHMM_glimmerT_56031-T1
Valid prediction for GlimmerHMM_glimmerT_56057-T1
Valid prediction for snap_scaffold_25-snap.1958-T1
Valid prediction for CodingQuarry_transcript_38727-T1
Valid prediction for GeneMark_model.97657_t
Couldn't classify 108541, 108546
Sorry, prediction GeneMark_model.97652_t fails validation.
(ATG)	 TG	108084-108103	GT	TTG
(AGG)	 AG	108299-108424	GT	AGG
(AGA)	 AG	108541-108546	GT	AGG
-recovered GeneMark_model.97652_t, initial, 108084, 108103
-recovered GeneMark_model.97652_t, internal, 108299, 108424
-recovered GeneMark_model.97652_t, internal, 108541, 108546
Valid prediction for HiQ_model.g37363.t1
Valid prediction for snap_scaffold_25-snap.1960-T1
Valid prediction for Augustus_model.g37372.t1
Valid prediction for GeneMark_model.97648_t
Valid prediction for snap_scaffold_25-snap.1961-T1
Valid prediction for HiQ_model.g37366.t1
Valid prediction for snap_scaffold_25-snap.1962-T1
Valid prediction for snap_scaffold_25-snap.1953-T1
Couldn't classify 174059, 174126
Couldn't classify 174920, 174998
Sorry, prediction pasa_asmbl_34442.p1 fails validation.
(CGC)	 CC	174059-174126	GT	CGG
(GTT)	 AG	174255-174370	GT	AGG
(GTG)	 AG	174484-174638	GT	AGG
(GAC)	 AG	174736-174791	GT	GAG
(TCA)	 AG	174920-174998	CT	AGC
-recovered pasa_asmbl_34442.p1, terminal, 174255, 174370
-recovered pasa_asmbl_34442.p1, internal, 174255, 174370
-recovered pasa_asmbl_34442.p1, internal, 174484, 174638
-recovered pasa_asmbl_34442.p1, internal, 174736, 174791
Couldn't classify 175713, 175721
Sorry, prediction pasa_asmbl_34441.p1 fails validation.
(ATC)	 AG	175713-175721	GT	AGG
(CAC)	 AG	175838-176047	GT	GGG
(GTG)	 AG	176365-176567	GT	GCG
(CGT)	 AG	176654-176758	GT	TGG
(CGA)	 AG	176855-176992	GT	AAG
(AAA)	 AG	177102-177123	AC	AGA
-recovered pasa_asmbl_34441.p1, terminal, 177102, 177123
-recovered pasa_asmbl_34441.p1, internal, 175713, 175721
-recovered pasa_asmbl_34441.p1, internal, 175838, 176047
-recovered pasa_asmbl_34441.p1, internal, 176365, 176567
-recovered pasa_asmbl_34441.p1, internal, 176654, 176758
-recovered pasa_asmbl_34441.p1, internal, 176855, 176992
Valid prediction for GlimmerHMM_glimmerT_56036-T1
Valid prediction for GlimmerHMM_glimmerT_56018-T1
Valid prediction for CodingQuarry_transcript_38726-T1
Valid prediction for snap_scaffold_25-snap.1964-T1
Valid prediction for snap_scaffold_25-snap.1929-T1
Valid prediction for GeneMark_model.97676_t
Valid prediction for snap_scaffold_25-snap.1930-T1
Valid prediction for snap_scaffold_25-snap.1946-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 113367, rend_intergenic: 98009  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124181, rend_intergenic: 115553  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132122, rend_intergenic: 126278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135591, rend_intergenic: 132473  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141893, rend_intergenic: 138165  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153527, rend_intergenic: 143873  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169499, rend_intergenic: 154346  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180326, rend_intergenic: 174178  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187583, rend_intergenic: 182551  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196004, rend_intergenic: 189123  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204929, rend_intergenic: 196484  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 218426, rend_intergenic: 208627  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 256637, rend_intergenic: 255728  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 259921
-exon list size: 936


building trellis

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31.7    
31.8    
31.9    
32.0    
32.1    
32.2    
32.3    
32.4    
32.5    
32.6    
32.7    
32.8    
32.9    
33.0    
33.2    
33.3    
33.4    
33.5    
33.6    
33.7    
33.8    
33.9    
34.0    
34.1    
34.2    
34.3    
34.4    
34.5    
34.6    
34.8    
34.9    
35.0    
35.1    
35.2    
35.3    
35.4    
35.5    
35.6    
35.7    
35.8    
35.9    
36.0    
36.1    
36.2    
36.4    
36.5    
36.6    
36.7    
36.8    
36.9    
37.0    
37.1    
37.2    
37.3    
37.4    
37.5    
37.6    
37.7    
37.8    
38.0    
38.1    
38.2    
38.3    
38.4    
38.5    
38.6    
38.7    
38.8    
38.9    
39.0    
39.1    
39.2    
39.3    
39.4    
39.6    
39.7    
39.8    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.8    
40.9    
41.0    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.5    
44.6    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.0    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 43 predictions from path traversal
Error with prediction: snap lend_intergenic: 113367, rend_intergenic: 98009  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124181, rend_intergenic: 115553  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132122, rend_intergenic: 126278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135591, rend_intergenic: 132473  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141893, rend_intergenic: 138165  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153527, rend_intergenic: 143873  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169499, rend_intergenic: 154346  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180326, rend_intergenic: 174178  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187583, rend_intergenic: 182551  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196004, rend_intergenic: 189123  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204929, rend_intergenic: 196484  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 218426, rend_intergenic: 208627  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 256637, rend_intergenic: 255728  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 25 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 246916 - 259921
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support