-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_25/scaffold_25_782370-1020839

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_25-snap.205-T1
Valid prediction for GlimmerHMM_glimmerT_54853-T1
Valid prediction for GlimmerHMM_glimmerT_54838-T1
Couldn't classify 196705, 196898
Couldn't classify 197034, 197166
Sorry, prediction pasa_asmbl_33353.p1 fails validation.
(GGA)	 AG	196705-196898	GT	AGG
(CTC)	 AG	197034-197166	GT	TGG
-recovered pasa_asmbl_33353.p1, internal, 196705, 196898
-recovered pasa_asmbl_33353.p1, internal, 197034, 197166
Valid prediction for GeneMark_model.95538_t
Valid prediction for snap_scaffold_25-snap.168-T1
Valid prediction for snap_scaffold_25-snap.208-T1
Valid prediction for snap_scaffold_25-snap.183-T1
Valid prediction for snap_scaffold_25-snap.209-T1
Valid prediction for GlimmerHMM_glimmerT_54859-T1
Valid prediction for GeneMark_model.95545_t
Valid prediction for GeneMark_model.95541_t
Valid prediction for GeneMark_model.95548_t
Couldn't classify 148374, 148481
Sorry, prediction pasa_asmbl_33346.p1 fails validation.
(ATT)	 AG	148374-148481	GT	TGG
(GAG)	 AG	148807-148967	GT	AAG
(ATT)	 AG	149125-149227	TC	GAT
add_exon() Sorry, pasa_asmbl_33346.p1 148807-148967-terminal-2 is invalid.
-recovered pasa_asmbl_33346.p1, terminal, 148807, 148967
-recovered pasa_asmbl_33346.p1, terminal, 149125, 149227
-recovered pasa_asmbl_33346.p1, internal, 148374, 148481
-recovered pasa_asmbl_33346.p1, internal, 148807, 148967
Valid prediction for GlimmerHMM_glimmerT_54856-T1
Valid prediction for snap_scaffold_25-snap.195-T1
Valid prediction for snap_scaffold_25-snap.177-T1
Valid prediction for snap_scaffold_25-snap.158-T1
Valid prediction for GeneMark_model.95553_t
Valid prediction for GeneMark_model.95555_t
Valid prediction for Augustus_model.g36659.t1
Valid prediction for snap_scaffold_25-snap.178-T1
Valid prediction for GeneMark_model.95564_t
Valid prediction for GlimmerHMM_glimmerT_54850-T1
Valid prediction for GlimmerHMM_glimmerT_54836-T1
Valid prediction for Augustus_model.g36648.t1
Valid prediction for GlimmerHMM_glimmerT_54849-T1
Valid prediction for snap_scaffold_25-snap.191-T1
Valid prediction for GlimmerHMM_glimmerT_54832-T1
Couldn't classify 201200, 201309
Couldn't classify 201942, 202161
Sorry, prediction pasa_asmbl_33855.p2 fails validation.
(GAG)	 AG	201200-201309	GT	TAG
(CGT)	 AG	201942-202161	GG	GAG
-recovered pasa_asmbl_33855.p2, internal, 201200, 201309
Valid prediction for GeneMark_model.95529_t
Valid prediction for GeneMark_model.95522_t
Valid prediction for Augustus_model.g36649.t1
Valid prediction for GeneMark_model.95534_t
Valid prediction for GeneMark_model.95520_t
Valid prediction for snap_scaffold_25-snap.199-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_25-snap.189-T1
Valid prediction for GeneMark_model.95524_t
Valid prediction for Augustus_model.g36664.t1
Valid prediction for GeneMark_model.95519_t
Valid prediction for snap_scaffold_25-snap.203-T1
Valid prediction for snap_scaffold_25-snap.164-T1
Valid prediction for GlimmerHMM_glimmerT_54861-T1
Valid prediction for Augustus_model.g36647.t1
Valid prediction for GlimmerHMM_glimmerT_54857-T1
Valid prediction for GeneMark_model.95551_t
Valid prediction for GeneMark_model.95543_t
Valid prediction for snap_scaffold_25-snap.181-T1
Couldn't classify 9839, 10005
Sorry, prediction pasa_asmbl_33859.p1 fails validation.
(CAG)	 CT	9839-10005	GT	AGG
(GCT)	 AG	10378-10518	GT	AGG
(GAG)	 AG	10904-11105	GT	AGG
(GTC)	 AG	11391-11501	GT	AGG
(CGC)	 AG	11662-11749	GT	AGG
(GGA)	 AG	11841-11901	GT	AAG
(GGA)	 AG	12522-12662	GT	AGG
(GCT)	 AG	13119-13206	GT	ATG
(TCT)	 AG	13327-13358	GT	ATG
(GGT)	 AG	13666-13748	GT	ATG
(CTT)	 AG	14477-14577	GT	ACG
(GTG)	 AG	14831-14932	GT	AGG
(CGT)	 AG	15349-15417	GT	AGG
(AGC)	 AG	15505-15663	GC	AAG
-recovered pasa_asmbl_33859.p1, terminal, 15505, 15663
-recovered pasa_asmbl_33859.p1, internal, 10378, 10518
-recovered pasa_asmbl_33859.p1, internal, 10904, 11105
-recovered pasa_asmbl_33859.p1, internal, 11391, 11501
-recovered pasa_asmbl_33859.p1, internal, 11662, 11749
-recovered pasa_asmbl_33859.p1, internal, 11841, 11901
-recovered pasa_asmbl_33859.p1, internal, 12522, 12662
-recovered pasa_asmbl_33859.p1, internal, 13119, 13206
-recovered pasa_asmbl_33859.p1, internal, 13327, 13358
-recovered pasa_asmbl_33859.p1, internal, 13666, 13748
-recovered pasa_asmbl_33859.p1, internal, 14477, 14577
-recovered pasa_asmbl_33859.p1, internal, 14831, 14932
-recovered pasa_asmbl_33859.p1, internal, 15349, 15417
-recovered pasa_asmbl_33859.p1, internal, 15505, 15663
Valid prediction for GlimmerHMM_glimmerT_54833-T1
Valid prediction for snap_scaffold_25-snap.161-T1
Valid prediction for snap_scaffold_25-snap.201-T1
Valid prediction for GeneMark_model.95556_t
Valid prediction for GeneMark_model.95516_t
Valid prediction for GeneMark_model.95536_t
Valid prediction for Augustus_model.g36645.t1
Valid prediction for snap_scaffold_25-snap.175-T1
Valid prediction for snap_scaffold_25-snap.196-T1
Valid prediction for snap_scaffold_25-snap.188-T1
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for GeneMark_model.95558_t
Valid prediction for snap_scaffold_25-snap.197-T1
Valid prediction for Augustus_model.g36655.t1
Valid prediction for GlimmerHMM_glimmerT_54855-T1
Valid prediction for Augustus_model.g36663.t1
Valid prediction for snap_scaffold_25-snap.166-T1
Valid prediction for GeneMark_model.95527_t
Valid prediction for GeneMark_model.95540_t
Valid prediction for GeneMark_model.95560_t
Valid prediction for snap_scaffold_25-snap.211-T1
Valid prediction for snap_scaffold_25-snap.185-T1
Valid prediction for GlimmerHMM_glimmerT_54842-T1
Valid prediction for GeneMark_model.95514_t
Valid prediction for Augustus_model.g36660.t1
Valid prediction for GlimmerHMM_glimmerT_54835-T1
Couldn't classify 194481, 194606
Couldn't classify 196346, 196605
Sorry, prediction pasa_asmbl_33350.p2 fails validation.
(GTG)	 GG	194481-194606	GT	AGG
(GTG)	 AG	196114-196204	GT	AGG
(ACT)	 AG	196346-196605	GA	AGG
-recovered pasa_asmbl_33350.p2, internal, 196114, 196204
Valid prediction for snap_scaffold_25-snap.186-T1
Valid prediction for CodingQuarry_transcript_38556-T1
Valid prediction for GeneMark_model.95535_t
Valid prediction for GeneMark_model.95549_t
Valid prediction for GlimmerHMM_glimmerT_54830-T1
Valid prediction for GeneMark_model.95563_t
Valid prediction for GlimmerHMM_glimmerT_54841-T1
Valid prediction for snap_scaffold_25-snap.170-T1
Valid prediction for GeneMark_model.95531_t
Valid prediction for snap_scaffold_25-snap.179-T1
Valid prediction for snap_scaffold_25-snap.173-T1
Valid prediction for GeneMark_model.95533_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_25-snap.157-T1
Valid prediction for Augustus_model.g36653.t1
Valid prediction for GeneMark_model.95532_t
Valid prediction for GlimmerHMM_glimmerT_54837-T1
Valid prediction for GeneMark_model.95559_t
Valid prediction for Augustus_model.g36646.t1
Valid prediction for GeneMark_model.95513_t
Valid prediction for GeneMark_model.95530_t
Valid prediction for snap_scaffold_25-snap.194-T1
Valid prediction for GeneMark_model.95539_t
Valid prediction for GlimmerHMM_glimmerT_54854-T1
Valid prediction for snap_scaffold_25-snap.176-T1
Valid prediction for GlimmerHMM_glimmerT_54839-T1
Valid prediction for GeneMark_model.95526_t
Valid prediction for snap_scaffold_25-snap.187-T1
Valid prediction for Augustus_model.g36651.t1
Valid prediction for GeneMark_model.95550_t
Valid prediction for snap_scaffold_25-snap.200-T1
Valid prediction for HiQ_model.g36650.t1
Valid prediction for pasa_asmbl_33996.p1
Valid prediction for GeneMark_model.95557_t
Valid prediction for snap_scaffold_25-snap.192-T1
Valid prediction for snap_scaffold_25-snap.174-T1
Valid prediction for GeneMark_model.95547_t
Valid prediction for Augustus_model.g36654.t1
Valid prediction for Augustus_model.g36656.t1
Valid prediction for snap_scaffold_25-snap.184-T1
Valid prediction for GeneMark_model.95521_t
Valid prediction for snap_scaffold_25-snap.160-T1
Couldn't classify 132550, 132578
Sorry, prediction pasa_asmbl_34001.p1 fails validation.
(AAA)	 TG	132550-132578	GT	TGG
(GTA)	 AG	133494-133669	GT	AGG
(ATG)	 AG	133999-134171	GT	AGG
(GTG)	 AG	136534-136727	GT	CAG
(GAT)	 AG	137608-137748	GT	AAG
(GAA)	 AG	138475-138663	GT	AGG
(CCT)	 AG	140592-140658	GT	AGG
(GGC)	 AG	140789-140881	AG	GAA
add_exon() Sorry, pasa_asmbl_34001.p1 133999-134171-initial-1 is invalid.
-recovered pasa_asmbl_34001.p1, initial, 133999, 134171
-recovered pasa_asmbl_34001.p1, terminal, 140789, 140881
-recovered pasa_asmbl_34001.p1, internal, 133494, 133669
-recovered pasa_asmbl_34001.p1, internal, 133999, 134171
-recovered pasa_asmbl_34001.p1, internal, 136534, 136727
-recovered pasa_asmbl_34001.p1, internal, 137608, 137748
-recovered pasa_asmbl_34001.p1, internal, 138475, 138663
-recovered pasa_asmbl_34001.p1, internal, 140592, 140658
Valid prediction for snap_scaffold_25-snap.167-T1
Valid prediction for GeneMark_model.95537_t
Valid prediction for snap_scaffold_25-snap.210-T1
Valid prediction for CodingQuarry_transcript_38553-T1
Valid prediction for HiQ_model.g36661.t1
Valid prediction for GeneMark_model.95515_t
Valid prediction for GeneMark_model.95517_t
Valid prediction for snap_scaffold_25-snap.202-T1
Valid prediction for GlimmerHMM_glimmerT_54860-T1
Couldn't classify 216852, 216884
Sorry, prediction pasa_asmbl_33995.p1 fails validation.
(CTG)	 CA	216852-216884	GT	TGG
(GTC)	 AG	217908-218105	GT	AGG
(CTG)	 AG	218201-218363	GT	CGG
(GCA)	 AG	218589-218738	GT	TGG
(GAA)	 AG	218847-219007	GT	AGG
(CTG)	 AG	219116-219292	GT	AGG
(AGG)	 AG	219581-219722	GT	AGG
(AGA)	 AG	219846-220033	GT	AGG
(GGC)	 AG	220592-220733	GT	AGG
(GCA)	 AG	220898-221073	TC	GAT
-recovered pasa_asmbl_33995.p1, terminal, 220898, 221073
-recovered pasa_asmbl_33995.p1, internal, 217908, 218105
-recovered pasa_asmbl_33995.p1, internal, 218201, 218363
-recovered pasa_asmbl_33995.p1, internal, 218589, 218738
-recovered pasa_asmbl_33995.p1, internal, 218847, 219007
-recovered pasa_asmbl_33995.p1, internal, 219116, 219292
-recovered pasa_asmbl_33995.p1, internal, 219581, 219722
-recovered pasa_asmbl_33995.p1, internal, 219846, 220033
-recovered pasa_asmbl_33995.p1, internal, 220592, 220733
Valid prediction for GlimmerHMM_glimmerT_54844-T1
Valid prediction for snap_scaffold_25-snap.171-T1
Valid prediction for Augustus_model.g36658.t1
Valid prediction for snap_scaffold_25-snap.198-T1
Valid prediction for HiQ_model.g36652.t1
Valid prediction for GeneMark_model.95562_t
Valid prediction for GlimmerHMM_glimmerT_54845-T1
Valid prediction for GlimmerHMM_glimmerT_54831-T1
Valid prediction for GeneMark_model.95523_t
Valid prediction for GlimmerHMM_glimmerT_54840-T1
Valid prediction for snap_scaffold_25-snap.169-T1
Valid prediction for GlimmerHMM_glimmerT_54834-T1
Valid prediction for snap_scaffold_25-snap.162-T1
Valid prediction for GeneMark_model.95561_t
Couldn't classify 132374, 132474
Sorry, prediction pasa_asmbl_34003.p1 fails validation.
(ATG)	 CC	130376-130652	GT	GGG
(GTC)	 AG	132374-132474	GG	TGG
-recovered pasa_asmbl_34003.p1, initial, 130376, 130652
Valid prediction for GeneMark_model.95546_t
Valid prediction for snap_scaffold_25-snap.190-T1
Valid prediction for CodingQuarry_transcript_38557-T1
Valid prediction for GeneMark_model.95552_t
Valid prediction for snap_scaffold_25-snap.182-T1
Valid prediction for GlimmerHMM_glimmerT_54843-T1
Valid prediction for GeneMark_model.95544_t
Valid prediction for Augustus_model.g36657.t1
Couldn't classify 20977, 21297
Sorry, prediction pasa_asmbl_34009.p1 fails validation.
(GCT)	 AA	20977-21297	GT	AGG
(GTC)	 AG	21393-22274	TT	GAT
-recovered pasa_asmbl_34009.p1, terminal, 21393, 22274
Valid prediction for GeneMark_model.95525_t
Valid prediction for CodingQuarry_transcript_38554-T1
Valid prediction for GlimmerHMM_glimmerT_54847-T1
Valid prediction for pasa_asmbl_34005.p1
Valid prediction for GeneMark_model.95528_t
Valid prediction for snap_scaffold_25-snap.204-T1
Valid prediction for GlimmerHMM_glimmerT_54858-T1
Valid prediction for GlimmerHMM_glimmerT_54852-T1
Valid prediction for snap_scaffold_25-snap.159-T1
Valid prediction for GeneMark_model.95554_t
Valid prediction for snap_scaffold_25-snap.172-T1
Valid prediction for snap_scaffold_25-snap.163-T1
Valid prediction for GlimmerHMM_glimmerT_54846-T1
Valid prediction for pasa_asmbl_34004.p1
Valid prediction for pasa_asmbl_34006.p1
Valid prediction for GeneMark_model.95542_t
Valid prediction for GeneMark_model.95518_t
Valid prediction for GlimmerHMM_glimmerT_54848-T1
Valid prediction for snap_scaffold_25-snap.206-T1
Valid prediction for snap_scaffold_25-snap.165-T1
Valid prediction for snap_scaffold_25-snap.180-T1
Valid prediction for snap_scaffold_25-snap.207-T1
Valid prediction for snap_scaffold_25-snap.193-T1
Valid prediction for GlimmerHMM_glimmerT_54851-T1
Valid prediction for HiQ_model.g36662.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9063, rend_intergenic: 2434  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15663, rend_intergenic: 9872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27765, rend_intergenic: 23801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33966, rend_intergenic: 27782  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36683, rend_intergenic: 34268  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44601, rend_intergenic: 40783  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47268, rend_intergenic: 44806  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55546, rend_intergenic: 48192  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61933, rend_intergenic: 56917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75663, rend_intergenic: 69279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77649, rend_intergenic: 76203  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78007, rend_intergenic: 77737  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86556, rend_intergenic: 78248  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101112, rend_intergenic: 99048  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104970, rend_intergenic: 102336  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107513, rend_intergenic: 105889  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109046, rend_intergenic: 107895  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117270, rend_intergenic: 112307  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122736, rend_intergenic: 117510  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123757, rend_intergenic: 123416  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149227, rend_intergenic: 136698  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165859, rend_intergenic: 160350  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177244, rend_intergenic: 172438  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184169, rend_intergenic: 177685  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190636, rend_intergenic: 184183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 192051, rend_intergenic: 191162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202461, rend_intergenic: 192575  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209887, rend_intergenic: 202769  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 235188, rend_intergenic: 232299  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 238470
-exon list size: 903


building trellis

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23.9    
24.0    
24.1    
24.2    
24.3    
24.4    
24.5    
24.6    
24.8    
24.9    
25.0    
25.1    
25.2    
25.3    
25.4    
25.5    
25.6    
25.7    
25.9    
26.0    
26.1    
26.2    
26.3    
26.4    
26.5    
26.6    
26.7    
26.9    
27.0    
27.1    
27.2    
27.3    
27.4    
27.5    
27.6    
27.7    
27.8    
28.0    
28.1    
28.2    
28.3    
28.4    
28.5    
28.6    
28.7    
28.8    
29.0    
29.1    
29.2    
29.3    
29.4    
29.5    
29.6    
29.7    
29.8    
29.9    
30.1    
30.2    
30.3    
30.4    
30.5    
30.6    
30.7    
30.8    
30.9    
31.0    
31.2    
31.3    
31.4    
31.5    
31.6    
31.7    
31.8    
31.9    
32.0    
32.2    
32.3    
32.4    
32.5    
32.6    
32.7    
32.8    
32.9    
33.0    
33.1    
33.3    
33.4    
33.5    
33.6    
33.7    
33.8    
33.9    
34.0    
34.1    
34.3    
34.4    
34.5    
34.6    
34.7    
34.8    
34.9    
35.0    
35.1    
35.2    
35.4    
35.5    
35.6    
35.7    
35.8    
35.9    
36.0    
36.1    
36.2    
36.4    
36.5    
36.6    
36.7    
36.8    
36.9    
37.0    
37.1    
37.2    
37.3    
37.5    
37.6    
37.7    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.5    
38.6    
38.7    
38.8    
38.9    
39.0    
39.1    
39.2    
39.3    
39.4    
39.6    
39.7    
39.8    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.6    
40.7    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.7    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.6    
99.7    
99.8    
99.9    
-found 36 predictions from path traversal
Error with prediction: snap lend_intergenic: 9063, rend_intergenic: 2434  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15663, rend_intergenic: 9872  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27765, rend_intergenic: 23801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33966, rend_intergenic: 27782  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36683, rend_intergenic: 34268  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44601, rend_intergenic: 40783  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47268, rend_intergenic: 44806  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55546, rend_intergenic: 48192  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61933, rend_intergenic: 56917  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75663, rend_intergenic: 69279  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77649, rend_intergenic: 76203  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78007, rend_intergenic: 77737  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 86556, rend_intergenic: 78248  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101112, rend_intergenic: 99048  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104970, rend_intergenic: 102336  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107513, rend_intergenic: 105889  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 109046, rend_intergenic: 107895  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117270, rend_intergenic: 112307  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122736, rend_intergenic: 117510  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123757, rend_intergenic: 123416  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149227, rend_intergenic: 136698  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165859, rend_intergenic: 160350  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177244, rend_intergenic: 172438  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184169, rend_intergenic: 177685  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 190636, rend_intergenic: 184183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 192051, rend_intergenic: 191162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 202461, rend_intergenic: 192575  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 209887, rend_intergenic: 202769  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 235188, rend_intergenic: 232299  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 26 predictions persist after filtering for low support