-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_25/scaffold_25_7786187-7966743

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g37271.t1
Couldn't classify 126033, 126091
Couldn't classify 126747, 126809
Sorry, prediction pasa_asmbl_33686.p1 fails validation.
(ACC)	 GG	126033-126091	GT	AGG
(GGA)	 AG	126276-126441	GT	AGG
(GAG)	 AG	126589-126669	GT	GGG
(GAT)	 AG	126747-126809	GG	ACG
-recovered pasa_asmbl_33686.p1, internal, 126276, 126441
-recovered pasa_asmbl_33686.p1, internal, 126589, 126669
Valid prediction for GlimmerHMM_glimmerT_55907-T1
Valid prediction for GeneMark_model.97455_t
Valid prediction for GlimmerHMM_glimmerT_55881-T1
Valid prediction for GeneMark_model.97411_t
Couldn't classify 80017, 80075
Sorry, prediction pasa_asmbl_33678.p1 fails validation.
(GCG)	 CA	80017-80075	GT	AGG
(TTC)	 AG	80242-80379	GT	AGG
(TGT)	 AG	80995-81094	GT	AGG
(GAG)	 AG	81338-81457	GT	AGG
(AGA)	 AG	81653-81823	GT	AGG
(GCC)	 AG	82022-82139	GT	CAG
(ATG)	 AG	84028-84170	TC	AAT
-recovered pasa_asmbl_33678.p1, terminal, 84028, 84170
-recovered pasa_asmbl_33678.p1, internal, 80242, 80379
-recovered pasa_asmbl_33678.p1, internal, 80995, 81094
-recovered pasa_asmbl_33678.p1, internal, 81338, 81457
-recovered pasa_asmbl_33678.p1, internal, 81653, 81823
-recovered pasa_asmbl_33678.p1, internal, 82022, 82139
Valid prediction for GeneMark_model.97421_t
Valid prediction for snap_scaffold_25-snap.1751-T1
Valid prediction for CodingQuarry_transcript_38710-T1
Valid prediction for Augustus_model.g37276.t1
Couldn't classify 174588, 174674
Couldn't classify 177811, 177964
Sorry, prediction pasa_asmbl_33703.p1 fails validation.
(GCC)	 AG	174588-174674	GT	AGG
(AAC)	 AG	174918-175015	GT	AGG
(GAC)	 AG	176302-176436	GT	AGG
(GAA)	 AG	177811-177964	GC	ACG
-recovered pasa_asmbl_33703.p1, internal, 174588, 174674
-recovered pasa_asmbl_33703.p1, internal, 174918, 175015
-recovered pasa_asmbl_33703.p1, internal, 176302, 176436
-recovered pasa_asmbl_33703.p1, internal, 177811, 177964
Couldn't classify 116256, 116283
Sorry, prediction pasa_asmbl_33684.p1 fails validation.
(GTT)	 AC	116256-116283	GT	AGG
(ATA)	 AG	116425-117176	CT	GAC
-recovered pasa_asmbl_33684.p1, terminal, 116425, 117176
Valid prediction for GlimmerHMM_glimmerT_55901-T1
Valid prediction for GlimmerHMM_glimmerT_55883-T1
Valid prediction for snap_scaffold_25-snap.1741-T1
Valid prediction for snap_scaffold_25-snap.1762-T1
Couldn't classify 14330, 14435
Sorry, prediction pasa_asmbl_33897.p1 fails validation.
(GGG)	 AG	14330-14435	GT	GGG
(CGT)	 AG	14632-14726	GT	GGG
(ATC)	 AG	14849-14960	GT	TGG
(GGG)	 AG	15045-15193	AG	AGA
-recovered pasa_asmbl_33897.p1, terminal, 15045, 15193
-recovered pasa_asmbl_33897.p1, internal, 14330, 14435
-recovered pasa_asmbl_33897.p1, internal, 14632, 14726
-recovered pasa_asmbl_33897.p1, internal, 14849, 14960
Valid prediction for CodingQuarry_transcript_38713-T1
Valid prediction for GeneMark_model.97446_t
Valid prediction for GlimmerHMM_glimmerT_55904-T1
Valid prediction for snap_scaffold_25-snap.1750-T1
Valid prediction for snap_scaffold_25-snap.1734-T1
Valid prediction for snap_scaffold_25-snap.1765-T1
Valid prediction for HiQ_model.g37284.t1
Valid prediction for GlimmerHMM_glimmerT_55897-T1
Couldn't classify 151929, 151991
Couldn't classify 154287, 154352
Sorry, prediction pasa_asmbl_33695.p2 fails validation.
(CAG)	 GC	151929-151991	GT	GGG
(GCC)	 AG	152457-152602	GT	GGG
(CCT)	 AG	152870-153011	GT	AGG
(CGG)	 AG	154287-154352	CA	CCC
-recovered pasa_asmbl_33695.p2, internal, 152457, 152602
-recovered pasa_asmbl_33695.p2, internal, 152870, 153011
Valid prediction for snap_scaffold_25-snap.1760-T1
Valid prediction for snap_scaffold_25-snap.1731-T1
Valid prediction for CodingQuarry_transcript_38705-T1
Valid prediction for GeneMark_model.97457_t
Valid prediction for Augustus_model.g37287.t1
Valid prediction for CodingQuarry_transcript_38704-T1
Valid prediction for CodingQuarry_transcript_38712-T1
Valid prediction for GeneMark_model.97423_t
Valid prediction for GeneMark_model.97431_t
Valid prediction for snap_scaffold_25-snap.1757-T1
Valid prediction for CodingQuarry_transcript_38711-T1
Valid prediction for snap_scaffold_25-snap.1729-T1
Valid prediction for GeneMark_model.97453_t
Valid prediction for Augustus_model.g37282.t1
Valid prediction for GlimmerHMM_glimmerT_55896-T1
Valid prediction for GeneMark_model.97425_t
Valid prediction for Augustus_model.g37285.t1
Valid prediction for GlimmerHMM_glimmerT_55894-T1
Valid prediction for snap_scaffold_25-snap.1737-T1
Valid prediction for GeneMark_model.97417_t
Valid prediction for GeneMark_model.97451_t
Valid prediction for GlimmerHMM_glimmerT_55892-T1
Valid prediction for GeneMark_model.97460_t
Valid prediction for GlimmerHMM_glimmerT_55893-T1
Valid prediction for GlimmerHMM_glimmerT_55887-T1
Valid prediction for GlimmerHMM_glimmerT_55908-T1
Valid prediction for GlimmerHMM_glimmerT_55886-T1
Couldn't classify 36451, 36513
Couldn't classify 39270, 39299
Sorry, prediction pasa_asmbl_33674.p1 fails validation.
(CAC)	 AG	36451-36513	GT	ACG
(AGT)	 AG	38734-38838	GT	AGG
(GCC)	 AG	38945-39073	GT	AGG
(AAC)	 AG	39270-39299	GT	CTG
-recovered pasa_asmbl_33674.p1, internal, 36451, 36513
-recovered pasa_asmbl_33674.p1, internal, 38734, 38838
-recovered pasa_asmbl_33674.p1, internal, 38945, 39073
-recovered pasa_asmbl_33674.p1, internal, 39270, 39299
Valid prediction for GeneMark_model.97434_t
Valid prediction for GeneMark_model.97413_t
Valid prediction for GeneMark_model.97426_t
Valid prediction for snap_scaffold_25-snap.1764-T1
Valid prediction for GlimmerHMM_glimmerT_55903-T1
Valid prediction for GeneMark_model.97449_t
Valid prediction for snap_scaffold_25-snap.1743-T1
Valid prediction for GeneMark_model.97445_t
Valid prediction for GlimmerHMM_glimmerT_55910-T1
Valid prediction for GeneMark_model.97437_t
Valid prediction for snap_scaffold_25-snap.1754-T1
Valid prediction for GlimmerHMM_glimmerT_55895-T1
Valid prediction for Augustus_model.g37275.t1
Valid prediction for snap_scaffold_25-snap.1745-T1
Valid prediction for Augustus_model.g37277.t1
Couldn't classify 148083, 148111
Couldn't classify 151760, 151835
Sorry, prediction pasa_asmbl_33694.p1 fails validation.
(ATT)	 TG	148083-148111	GT	AGG
(CAC)	 AG	148520-148569	GT	AGG
(TGT)	 AG	148706-148755	GT	AGG
(CTC)	 AG	149179-149227	GT	CTG
(TGA)	 AG	150612-150757	GT	TGG
(GTC)	 AG	150924-151072	GT	TGG
(GTA)	 AG	151217-151447	GT	GAG
(ACA)	 AG	151760-151835	GC	AGG
-recovered pasa_asmbl_33694.p1, terminal, 151217, 151447
-recovered pasa_asmbl_33694.p1, internal, 148520, 148569
-recovered pasa_asmbl_33694.p1, internal, 148706, 148755
-recovered pasa_asmbl_33694.p1, internal, 149179, 149227
-recovered pasa_asmbl_33694.p1, internal, 150612, 150757
-recovered pasa_asmbl_33694.p1, internal, 150924, 151072
-recovered pasa_asmbl_33694.p1, internal, 151217, 151447
-recovered pasa_asmbl_33694.p1, internal, 151760, 151835
Valid prediction for GlimmerHMM_glimmerT_55911-T1
Valid prediction for GlimmerHMM_glimmerT_55909-T1
Valid prediction for GeneMark_model.97433_t
Valid prediction for Augustus_model.g37280.t1
Valid prediction for pasa_asmbl_33676.p1
Valid prediction for GeneMark_model.97448_t
Valid prediction for Augustus_model.g37265.t1
Valid prediction for GeneMark_model.97409_t
Valid prediction for GeneMark_model.97429_t
Valid prediction for snap_scaffold_25-snap.1769-T1
Valid prediction for snap_scaffold_25-snap.1770-T1
Valid prediction for GeneMark_model.97435_t
Valid prediction for GlimmerHMM_glimmerT_55882-T1
Couldn't classify 147807, 147922
Sorry, prediction pasa_asmbl_33693.p1 fails validation.
(ATG)	 CC	143586-143681	GT	AGG
(GCC)	 AG	146171-146266	GT	ACG
(TTG)	 AG	146740-146820	GT	AGG
(AGG)	 AG	146940-147020	GT	AGG
(GAT)	 AG	147298-147405	GT	TGG
(ATG)	 AG	147489-147618	GT	AGG
(GTG)	 AG	147807-147922	GT	GGG
-recovered pasa_asmbl_33693.p1, initial, 143586, 143681
-recovered pasa_asmbl_33693.p1, initial, 147489, 147618
-recovered pasa_asmbl_33693.p1, internal, 146171, 146266
-recovered pasa_asmbl_33693.p1, internal, 146740, 146820
-recovered pasa_asmbl_33693.p1, internal, 146940, 147020
-recovered pasa_asmbl_33693.p1, internal, 147298, 147405
-recovered pasa_asmbl_33693.p1, internal, 147489, 147618
-recovered pasa_asmbl_33693.p1, internal, 147807, 147922
Valid prediction for GlimmerHMM_glimmerT_55914-T1
Couldn't classify 139776, 139959
Sorry, prediction pasa_asmbl_33688.p1 fails validation.
(ATG)	 AA	136652-136723	GT	GGG
(ATT)	 AG	137373-137449	GT	ACG
(TGC)	 AG	138047-138185	GT	CTG
(CCG)	 AG	138599-138802	GT	AGG
(CGG)	 AG	138886-139008	GT	AGG
(GAC)	 AG	139135-139203	GT	AGG
(AAG)	 AG	139313-139490	GT	AGG
(AGA)	 AG	139597-139675	GT	AGG
(CGA)	 AG	139776-139959	AG	GGA
-recovered pasa_asmbl_33688.p1, initial, 136652, 136723
-recovered pasa_asmbl_33688.p1, terminal, 139597, 139675
-recovered pasa_asmbl_33688.p1, internal, 137373, 137449
-recovered pasa_asmbl_33688.p1, internal, 138047, 138185
-recovered pasa_asmbl_33688.p1, internal, 138599, 138802
-recovered pasa_asmbl_33688.p1, internal, 138886, 139008
-recovered pasa_asmbl_33688.p1, internal, 139135, 139203
-recovered pasa_asmbl_33688.p1, internal, 139313, 139490
-recovered pasa_asmbl_33688.p1, internal, 139597, 139675
Valid prediction for GlimmerHMM_glimmerT_55889-T1
Valid prediction for Augustus_model.g37266.t1
Couldn't classify 111799, 111825
Couldn't classify 113611, 113651
Sorry, prediction pasa_asmbl_33683.p2 fails validation.
(GAC)	 TG	111799-111825	GT	GGG
(GTC)	 AG	112103-112165	GT	ACG
(GTG)	 AG	112398-112496	GT	TGG
(AAC)	 AG	112803-112902	GT	TGG
(GTG)	 AG	113222-113332	GT	CGG
(AGC)	 AG	113611-113651	AA	AGA
-recovered pasa_asmbl_33683.p2, internal, 112103, 112165
-recovered pasa_asmbl_33683.p2, internal, 112398, 112496
-recovered pasa_asmbl_33683.p2, internal, 112803, 112902
-recovered pasa_asmbl_33683.p2, internal, 113222, 113332
Valid prediction for HiQ_model.g37274.t1
Valid prediction for GeneMark_model.97419_t
Couldn't classify 164400, 164485
Sorry, prediction pasa_asmbl_33905.p1 fails validation.
(AAT)	 AG	164400-164485	GT	AGG
(TGA)	 AG	164640-164761	GT	TGG
(TGG)	 AG	164918-164997	GT	CTG
(GCC)	 AG	165150-165245	TT	GAT
-recovered pasa_asmbl_33905.p1, terminal, 165150, 165245
-recovered pasa_asmbl_33905.p1, internal, 164400, 164485
-recovered pasa_asmbl_33905.p1, internal, 164640, 164761
-recovered pasa_asmbl_33905.p1, internal, 164918, 164997
Valid prediction for GlimmerHMM_glimmerT_55890-T1
Couldn't classify 12173, 12279
Couldn't classify 13058, 13122
Sorry, prediction pasa_asmbl_33673.p1 fails validation.
(TTT)	 GG	12173-12279	GT	AGG
(GTT)	 AG	12567-12708	GT	AGG
(GTG)	 AG	12801-12948	GT	AGG
(ACG)	 AG	13058-13122	CC	AGC
-recovered pasa_asmbl_33673.p1, internal, 12567, 12708
-recovered pasa_asmbl_33673.p1, internal, 12801, 12948
Couldn't classify 154869, 155066
Couldn't classify 159176, 159229
Sorry, prediction pasa_asmbl_33697.p1 fails validation.
(GGC)	 CA	154869-155066	GT	AGG
(AAT)	 AG	155224-155297	GT	AAG
(CTT)	 AG	155876-155899	GT	AGG
(GCC)	 AG	158375-158525	GT	AGG
(AAG)	 AG	158654-158794	GT	AGG
(GCT)	 AG	159176-159229	GT	AGG
-recovered pasa_asmbl_33697.p1, internal, 155224, 155297
-recovered pasa_asmbl_33697.p1, internal, 155876, 155899
-recovered pasa_asmbl_33697.p1, internal, 158375, 158525
-recovered pasa_asmbl_33697.p1, internal, 158654, 158794
-recovered pasa_asmbl_33697.p1, internal, 159176, 159229
Couldn't classify 140038, 140073
Sorry, prediction pasa_asmbl_33689.p1 fails validation.
(GCC)	 CC	140038-140073	GT	AGG
(GTG)	 AG	140176-140309	GC	AGG
(GTC)	 AG	140492-140547	GT	GGG
(AGC)	 AG	140722-140792	GT	CTG
(GAC)	 AG	140953-141054	GT	AGG
(ATC)	 AG	141348-141495	GT	AGG
(ACC)	 AG	141602-141716	GT	AGG
(GCC)	 AG	141814-141910	AG	GAA
-recovered pasa_asmbl_33689.p1, terminal, 141814, 141910
-recovered pasa_asmbl_33689.p1, internal, 140176, 140309
-recovered pasa_asmbl_33689.p1, internal, 140492, 140547
-recovered pasa_asmbl_33689.p1, internal, 140722, 140792
-recovered pasa_asmbl_33689.p1, internal, 140953, 141054
-recovered pasa_asmbl_33689.p1, internal, 141348, 141495
-recovered pasa_asmbl_33689.p1, internal, 141602, 141716
Valid prediction for GeneMark_model.97443_t
Valid prediction for Augustus_model.g37270.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for CodingQuarry_transcript_38708-T1
Valid prediction for Augustus_model.g37286.t1
Valid prediction for CodingQuarry_transcript_38707-T1
Valid prediction for GeneMark_model.97444_t
Valid prediction for snap_scaffold_25-snap.1771-T1
Valid prediction for snap_scaffold_25-snap.1761-T1
Valid prediction for snap_scaffold_25-snap.1740-T1
Valid prediction for GlimmerHMM_glimmerT_55898-T1
Valid prediction for GlimmerHMM_glimmerT_55888-T1
Valid prediction for GeneMark_model.97450_t
Valid prediction for GeneMark_model.97458_t
Valid prediction for GeneMark_model.97432_t
Couldn't classify 131674, 131776
Couldn't classify 131873, 132132
Sorry, prediction pasa_asmbl_34382.p1 fails validation.
(AGG)	 CC	131674-131776	GT	GGG
(GCT)	 AG	131873-132132	AC	CCA
Valid prediction for Augustus_model.g37283.t1
Valid prediction for snap_scaffold_25-snap.1758-T1
Valid prediction for GeneMark_model.97410_t
Valid prediction for snap_scaffold_25-snap.1746-T1
Valid prediction for pasa_asmbl_34389.p1
Valid prediction for snap_scaffold_25-snap.1747-T1
Valid prediction for GeneMark_model.97412_t
Valid prediction for snap_scaffold_25-snap.1755-T1
Valid prediction for snap_scaffold_25-snap.1730-T1
Valid prediction for pasa_asmbl_34381.p1
Valid prediction for GeneMark_model.97456_t
Valid prediction for GeneMark_model.97416_t
Valid prediction for GeneMark_model.97436_t
Valid prediction for snap_scaffold_25-snap.1772-T1
Valid prediction for snap_scaffold_25-snap.1748-T1
Valid prediction for snap_scaffold_25-snap.1742-T1
Valid prediction for snap_scaffold_25-snap.1728-T1
Valid prediction for GeneMark_model.97447_t
Valid prediction for GlimmerHMM_glimmerT_55900-T1
Valid prediction for GeneMark_model.97461_t
Valid prediction for snap_scaffold_25-snap.1749-T1
Valid prediction for GlimmerHMM_glimmerT_55899-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_25-snap.1744-T1
Valid prediction for GeneMark_model.97440_t
Valid prediction for GeneMark_model.97430_t
Valid prediction for GeneMark_model.97459_t
Valid prediction for pasa_asmbl_34378.p2
Valid prediction for snap_scaffold_25-snap.1735-T1
Valid prediction for GeneMark_model.97427_t
Valid prediction for Augustus_model.g37279.t1
Valid prediction for CodingQuarry_transcript_38709-T1
Valid prediction for Augustus_model.g37269.t1
Valid prediction for GlimmerHMM_glimmerT_55905-T1
Valid prediction for GlimmerHMM_glimmerT_55913-T1
Valid prediction for CodingQuarry_transcript_38703-T1
Valid prediction for snap_scaffold_25-snap.1768-T1
Valid prediction for GeneMark_model.97438_t
Valid prediction for snap_scaffold_25-snap.1739-T1
Valid prediction for GeneMark_model.97418_t
Valid prediction for GeneMark_model.97442_t
Valid prediction for Augustus_model.g37272.t1
Valid prediction for HiQ_model.g37268.t1
Valid prediction for GeneMark_model.97454_t
Valid prediction for Augustus_model.g37273.t1
Couldn't classify 79738, 80541
Sorry, prediction pasa_asmbl_33682.p1 fails validation.
(CTG)	 CT	79738-80541	CC	AGC
Valid prediction for Augustus_model.g37278.t1
Valid prediction for snap_scaffold_25-snap.1736-T1
Valid prediction for HiQ_model.g37281.t1
Valid prediction for snap_scaffold_25-snap.1767-T1
Valid prediction for GeneMark_model.97428_t
Valid prediction for snap_scaffold_25-snap.1738-T1
Valid prediction for GlimmerHMM_glimmerT_55884-T1
Valid prediction for GlimmerHMM_glimmerT_55885-T1
Valid prediction for snap_scaffold_25-snap.1763-T1
Valid prediction for snap_scaffold_25-snap.1759-T1
Valid prediction for snap_scaffold_25-snap.1766-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for HiQ_model.g37267.t1
Valid prediction for GlimmerHMM_glimmerT_55912-T1
Valid prediction for pasa_asmbl_34385.p1
Valid prediction for snap_scaffold_25-snap.1752-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_55902-T1
Valid prediction for GlimmerHMM_glimmerT_55891-T1
Valid prediction for GeneMark_model.97424_t
Valid prediction for snap_scaffold_25-snap.1753-T1
Valid prediction for GeneMark_model.97441_t
Valid prediction for snap_scaffold_25-snap.1733-T1
Valid prediction for snap_scaffold_25-snap.1756-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GeneMark_model.97414_t
Valid prediction for GeneMark_model.97422_t
Valid prediction for GlimmerHMM_glimmerT_55906-T1
Valid prediction for GeneMark_model.97452_t
Valid prediction for GeneMark_model.97420_t
Valid prediction for GeneMark_model.97415_t
Valid prediction for snap_scaffold_25-snap.1732-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5151, rend_intergenic: 1611  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8652, rend_intergenic: 5155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15923, rend_intergenic: 10330  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18487, rend_intergenic: 16686  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20260, rend_intergenic: 18487  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32260, rend_intergenic: 23013  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44442, rend_intergenic: 32333  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51894, rend_intergenic: 45734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54995, rend_intergenic: 54272  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55617, rend_intergenic: 55090  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68972, rend_intergenic: 56200  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78162, rend_intergenic: 74278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84170, rend_intergenic: 82598  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89876, rend_intergenic: 85839  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117176, rend_intergenic: 111959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129151, rend_intergenic: 123961  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134416, rend_intergenic: 131207  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163447, rend_intergenic: 149410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178024, rend_intergenic: 171418  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 180557
-exon list size: 901


building trellis

0.1    
0.2    
0.3    
0.4    
0.6    
0.7    
0.8    
0.9    
1.0    
1.1    
1.2    
1.3    
1.4    
1.6    
1.7    
1.8    
1.9    
2.0    
2.1    
2.2    
2.3    
2.4    
2.5    
2.7    
2.8    
2.9    
3.0    
3.1    
3.2    
3.3    
3.4    
3.5    
3.7    
3.8    
3.9    
4.0    
4.1    
4.2    
4.3    
4.4    
4.5    
4.7    
4.8    
4.9    
5.0    
5.1    
5.2    
5.3    
5.4    
5.5    
5.6    
5.8    
5.9    
6.0    
6.1    
6.2    
6.3    
6.4    
6.5    
6.6    
6.8    
6.9    
7.0    
7.1    
7.2    
7.3    
7.4    
7.5    
7.6    
7.8    
7.9    
8.0    
8.1    
8.2    
8.3    
8.4    
8.5    
8.6    
8.7    
8.9    
9.0    
9.1    
9.2    
9.3    
9.4    
9.5    
9.6    
9.7    
9.9    
10.0    
10.1    
10.2    
10.3    
10.4    
10.5    
10.6    
10.7    
10.9    
11.0    
11.1    
11.2    
11.3    
11.4    
11.5    
11.6    
11.7    
11.8    
12.0    
12.1    
12.2    
12.3    
12.4    
12.5    
12.6    
12.7    
12.8    
13.0    
13.1    
13.2    
13.3    
13.4    
13.5    
13.6    
13.7    
13.8    
14.0    
14.1    
14.2    
14.3    
14.4    
14.5    
14.6    
14.7    
14.8    
15.0    
15.1    
15.2    
15.3    
15.4    
15.5    
15.6    
15.7    
15.8    
15.9    
16.1    
16.2    
16.3    
16.4    
16.5    
16.6    
16.7    
16.8    
16.9    
17.1    
17.2    
17.3    
17.4    
17.5    
17.6    
17.7    
17.8    
17.9    
18.1    
18.2    
18.3    
18.4    
18.5    
18.6    
18.7    
18.8    
18.9    
19.0    
19.2    
19.3    
19.4    
19.5    
19.6    
19.7    
19.8    
19.9    
20.0    
20.2    
20.3    
20.4    
20.5    
20.6    
20.7    
20.8    
20.9    
21.0    
21.2    
21.3    
21.4    
21.5    
21.6    
21.7    
21.8    
21.9    
22.0    
22.1    
22.3    
22.4    
22.5    
22.6    
22.7    
22.8    
22.9    
23.0    
23.1    
23.3    
23.4    
23.5    
23.6    
23.7    
23.8    
23.9    
24.0    
24.1    
24.3    
24.4    
24.5    
24.6    
24.7    
24.8    
24.9    
25.0    
25.1    
25.2    
25.4    
25.5    
25.6    
25.7    
25.8    
25.9    
26.0    
26.1    
26.2    
26.4    
26.5    
26.6    
26.7    
26.8    
26.9    
27.0    
27.1    
27.2    
27.4    
27.5    
27.6    
27.7    
27.8    
27.9    
28.0    
28.1    
28.2    
28.3    
28.5    
28.6    
28.7    
28.8    
28.9    
29.0    
29.1    
29.2    
29.3    
29.5    
29.6    
29.7    
29.8    
29.9    
30.0    
30.1    
30.2    
30.3    
30.5    
30.6    
30.7    
30.8    
30.9    
31.0    
31.1    
31.2    
31.3    
31.5    
31.6    
31.7    
31.8    
31.9    
32.0    
32.1    
32.2    
32.3    
32.4    
32.6    
32.7    
32.8    
32.9    
33.0    
33.1    
33.2    
33.3    
33.4    
33.6    
33.7    
33.8    
33.9    
34.0    
34.1    
34.2    
34.3    
34.4    
34.6    
34.7    
34.8    
34.9    
35.0    
35.1    
35.2    
35.3    
35.4    
35.5    
35.7    
35.8    
35.9    
36.0    
36.1    
36.2    
36.3    
36.4    
36.5    
36.7    
36.8    
36.9    
37.0    
37.1    
37.2    
37.3    
37.4    
37.5    
37.7    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.4    
38.5    
38.6    
38.8    
38.9    
39.0    
39.1    
39.2    
39.3    
39.4    
39.5    
39.6    
39.8    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.6    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.7    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.9    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.8    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.6    
99.7    
99.8    
99.9    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 5151, rend_intergenic: 1611  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8652, rend_intergenic: 5155  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15923, rend_intergenic: 10330  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 18487, rend_intergenic: 16686  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20260, rend_intergenic: 18487  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32260, rend_intergenic: 23013  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44442, rend_intergenic: 32333  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51894, rend_intergenic: 45734  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54995, rend_intergenic: 54272  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55617, rend_intergenic: 55090  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68972, rend_intergenic: 56200  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78162, rend_intergenic: 74278  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84170, rend_intergenic: 82598  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89876, rend_intergenic: 85839  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117176, rend_intergenic: 111959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129151, rend_intergenic: 123961  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134416, rend_intergenic: 131207  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 163447, rend_intergenic: 149410  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 178024, rend_intergenic: 171418  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 23 predictions persist after filtering for low support