-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_25/scaffold_25_7545300-7640147

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g37237.t1
Valid prediction for snap_scaffold_25-snap.1677-T1
Valid prediction for GeneMark_model.97339_t
Valid prediction for snap_scaffold_25-snap.1664-T1
Valid prediction for GeneMark_model.97352_t
Valid prediction for snap_scaffold_25-snap.1657-T1
Valid prediction for Augustus_model.g37238.t1
Valid prediction for Augustus_model.g37245.t1
Valid prediction for GeneMark_model.97357_t
Valid prediction for GeneMark_model.97348_t
Valid prediction for GeneMark_model.97355_t
Valid prediction for GeneMark_model.97345_t
Valid prediction for snap_scaffold_25-snap.1658-T1
Valid prediction for GeneMark_model.97337_t
Valid prediction for GlimmerHMM_glimmerT_55843-T1
Valid prediction for Augustus_model.g37241.t1
Valid prediction for Augustus_model.g37236.t1
Valid prediction for GeneMark_model.97342_t
Valid prediction for GlimmerHMM_glimmerT_55840-T1
Valid prediction for Augustus_model.g37247.t1
Valid prediction for GlimmerHMM_glimmerT_55847-T1
Valid prediction for GeneMark_model.97358_t
Valid prediction for GlimmerHMM_glimmerT_55838-T1
Valid prediction for Augustus_model.g37244.t1
Valid prediction for snap_scaffold_25-snap.1659-T1
Valid prediction for GlimmerHMM_glimmerT_55836-T1
Valid prediction for GlimmerHMM_glimmerT_55844-T1
Valid prediction for snap_scaffold_25-snap.1669-T1
Valid prediction for GeneMark_model.97360_t
Valid prediction for snap_scaffold_25-snap.1653-T1
Valid prediction for Augustus_model.g37248.t1
Valid prediction for snap_scaffold_25-snap.1652-T1
Valid prediction for GlimmerHMM_glimmerT_55850-T1
Valid prediction for GlimmerHMM_glimmerT_55845-T1
Valid prediction for GeneMark_model.97346_t
Valid prediction for snap_scaffold_25-snap.1673-T1
Valid prediction for GlimmerHMM_glimmerT_55849-T1
Valid prediction for GeneMark_model.97353_t
Valid prediction for Augustus_model.g37239.t1
Valid prediction for snap_scaffold_25-snap.1672-T1
Valid prediction for snap_scaffold_25-snap.1671-T1
Valid prediction for snap_scaffold_25-snap.1665-T1
Valid prediction for snap_scaffold_25-snap.1662-T1
Valid prediction for Augustus_model.g37246.t1
Valid prediction for GeneMark_model.97343_t
Valid prediction for Augustus_model.g37240.t1
Valid prediction for GlimmerHMM_glimmerT_55846-T1
Valid prediction for GlimmerHMM_glimmerT_55851-T1
Valid prediction for snap_scaffold_25-snap.1685-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GeneMark_model.97349_t
Valid prediction for GlimmerHMM_glimmerT_55837-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.97350_t
Valid prediction for GlimmerHMM_glimmerT_55852-T1
Valid prediction for GlimmerHMM_glimmerT_55839-T1
Valid prediction for snap_scaffold_25-snap.1678-T1
Valid prediction for GlimmerHMM_glimmerT_55833-T1
Valid prediction for GeneMark_model.97340_t
Valid prediction for snap_scaffold_25-snap.1681-T1
Valid prediction for GeneMark_model.97356_t
Valid prediction for GlimmerHMM_glimmerT_55848-T1
Valid prediction for snap_scaffold_25-snap.1682-T1
Valid prediction for snap_scaffold_25-snap.1666-T1
Valid prediction for GeneMark_model.97351_t
Valid prediction for snap_scaffold_25-snap.1667-T1
Valid prediction for Augustus_model.g37243.t1
Valid prediction for snap_scaffold_25-snap.1660-T1
Valid prediction for GlimmerHMM_glimmerT_55834-T1
Valid prediction for snap_scaffold_25-snap.1655-T1
Valid prediction for snap_scaffold_25-snap.1683-T1
Valid prediction for snap_scaffold_25-snap.1654-T1
Valid prediction for Augustus_model.g37242.t1
Valid prediction for GlimmerHMM_glimmerT_55841-T1
Valid prediction for snap_scaffold_25-snap.1680-T1
Valid prediction for snap_scaffold_25-snap.1679-T1
Valid prediction for snap_scaffold_25-snap.1675-T1
Valid prediction for snap_scaffold_25-snap.1674-T1
Valid prediction for GeneMark_model.97354_t
Valid prediction for snap_scaffold_25-snap.1661-T1
Valid prediction for GeneMark_model.97338_t
Valid prediction for GeneMark_model.97359_t
Valid prediction for Augustus_model.g37249.t1
Valid prediction for snap_scaffold_25-snap.1668-T1
Valid prediction for snap_scaffold_25-snap.1656-T1
Valid prediction for GlimmerHMM_glimmerT_55835-T1
Valid prediction for snap_scaffold_25-snap.1684-T1
Valid prediction for GeneMark_model.97344_t
Valid prediction for GeneMark_model.97341_t
Valid prediction for GlimmerHMM_glimmerT_55853-T1
Valid prediction for GlimmerHMM_glimmerT_55842-T1
Valid prediction for snap_scaffold_25-snap.1676-T1
Valid prediction for snap_scaffold_25-snap.1670-T1
Valid prediction for snap_scaffold_25-snap.1663-T1
Valid prediction for GeneMark_model.97347_t
Valid prediction for GeneMark_model.97361_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11280, rend_intergenic: 5277  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14541, rend_intergenic: 11519  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32770, rend_intergenic: 30231  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63683, rend_intergenic: 59728  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69938, rend_intergenic: 68108  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78990, rend_intergenic: 76334  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93134, rend_intergenic: 91232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 94848
-exon list size: 394


building trellis

0.3    
0.5    
0.8    
1.0    
1.3    
1.5    
1.8    
2.0    
2.3    
2.5    
2.8    
3.0    
3.3    
3.5    
3.8    
4.0    
4.3    
4.5    
4.8    
5.1    
5.3    
5.6    
5.8    
6.1    
6.3    
6.6    
6.8    
7.1    
7.3    
7.6    
7.8    
8.1    
8.3    
8.6    
8.8    
9.1    
9.3    
9.6    
9.8    
10.1    
10.4    
10.6    
10.9    
11.1    
11.4    
11.6    
11.9    
12.1    
12.4    
12.6    
12.9    
13.1    
13.4    
13.6    
13.9    
14.1    
14.4    
14.6    
14.9    
15.2    
15.4    
15.7    
15.9    
16.2    
16.4    
16.7    
16.9    
17.2    
17.4    
17.7    
17.9    
18.2    
18.4    
18.7    
18.9    
19.2    
19.4    
19.7    
19.9    
20.2    
20.5    
20.7    
21.0    
21.2    
21.5    
21.7    
22.0    
22.2    
22.5    
22.7    
23.0    
23.2    
23.5    
23.7    
24.0    
24.2    
24.5    
24.7    
25.0    
25.3    
25.5    
25.8    
26.0    
26.3    
26.5    
26.8    
27.0    
27.3    
27.5    
27.8    
28.0    
28.3    
28.5    
28.8    
29.0    
29.3    
29.5    
29.8    
30.1    
30.3    
30.6    
30.8    
31.1    
31.3    
31.6    
31.8    
32.1    
32.3    
32.6    
32.8    
33.1    
33.3    
33.6    
33.8    
34.1    
34.3    
34.6    
34.8    
35.1    
35.4    
35.6    
35.9    
36.1    
36.4    
36.6    
36.9    
37.1    
37.4    
37.6    
37.9    
38.1    
38.4    
38.6    
38.9    
39.1    
39.4    
39.6    
39.9    
40.2    
40.4    
40.7    
40.9    
41.2    
41.4    
41.7    
41.9    
42.2    
42.4    
42.7    
42.9    
43.2    
43.4    
43.7    
43.9    
44.2    
44.4    
44.7    
44.9    
45.2    
45.5    
45.7    
46.0    
46.2    
46.5    
46.7    
47.0    
47.2    
47.5    
47.7    
48.0    
48.2    
48.5    
48.7    
49.0    
49.2    
49.5    
49.7    
50.0    
50.3    
50.5    
50.8    
51.0    
51.3    
51.5    
51.8    
52.0    
52.3    
52.5    
52.8    
53.0    
53.3    
53.5    
53.8    
54.0    
54.3    
54.5    
54.8    
55.1    
55.3    
55.6    
55.8    
56.1    
56.3    
56.6    
56.8    
57.1    
57.3    
57.6    
57.8    
58.1    
58.3    
58.6    
58.8    
59.1    
59.3    
59.6    
59.8    
60.1    
60.4    
60.6    
60.9    
61.1    
61.4    
61.6    
61.9    
62.1    
62.4    
62.6    
62.9    
63.1    
63.4    
63.6    
63.9    
64.1    
64.4    
64.6    
64.9    
65.2    
65.4    
65.7    
65.9    
66.2    
66.4    
66.7    
66.9    
67.2    
67.4    
67.7    
67.9    
68.2    
68.4    
68.7    
68.9    
69.2    
69.4    
69.7    
69.9    
70.2    
70.5    
70.7    
71.0    
71.2    
71.5    
71.7    
72.0    
72.2    
72.5    
72.7    
73.0    
73.2    
73.5    
73.7    
74.0    
74.2    
74.5    
74.7    
75.0    
75.3    
75.5    
75.8    
76.0    
76.3    
76.5    
76.8    
77.0    
77.3    
77.5    
77.8    
78.0    
78.3    
78.5    
78.8    
79.0    
79.3    
79.5    
79.8    
80.1    
80.3    
80.6    
80.8    
81.1    
81.3    
81.6    
81.8    
82.1    
82.3    
82.6    
82.8    
83.1    
83.3    
83.6    
83.8    
84.1    
84.3    
84.6    
84.8    
85.1    
85.4    
85.6    
85.9    
86.1    
86.4    
86.6    
86.9    
87.1    
87.4    
87.6    
87.9    
88.1    
88.4    
88.6    
88.9    
89.1    
89.4    
89.6    
89.9    
90.2    
90.4    
90.7    
90.9    
91.2    
91.4    
91.7    
91.9    
92.2    
92.4    
92.7    
92.9    
93.2    
93.4    
93.7    
93.9    
94.2    
94.4    
94.7    
94.9    
95.2    
95.5    
95.7    
96.0    
96.2    
96.5    
96.7    
97.0    
97.2    
97.5    
97.7    
98.0    
98.2    
98.5    
98.7    
99.0    
99.2    
99.5    
99.7    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 11280, rend_intergenic: 5277  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14541, rend_intergenic: 11519  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32770, rend_intergenic: 30231  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63683, rend_intergenic: 59728  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69938, rend_intergenic: 68108  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78990, rend_intergenic: 76334  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93134, rend_intergenic: 91232  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support