-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_25/scaffold_25_7396358-7548386

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_25-snap.1620-T1
Valid prediction for GeneMark_model.97318_t
Valid prediction for GlimmerHMM_glimmerT_55831-T1
Valid prediction for snap_scaffold_25-snap.1623-T1
Valid prediction for GlimmerHMM_glimmerT_55815-T1
Valid prediction for snap_scaffold_25-snap.1630-T1
Valid prediction for snap_scaffold_25-snap.1644-T1
Valid prediction for Augustus_model.g37234.t1
Valid prediction for Augustus_model.g37227.t1
Valid prediction for GlimmerHMM_glimmerT_55824-T1
Valid prediction for GeneMark_model.97332_t
Valid prediction for snap_scaffold_25-snap.1641-T1
Valid prediction for GlimmerHMM_glimmerT_55816-T1
Valid prediction for GeneMark_model.97308_t
Valid prediction for GeneMark_model.97316_t
Valid prediction for GeneMark_model.97322_t
Valid prediction for GeneMark_model.97327_t
Valid prediction for GeneMark_model.97328_t
Valid prediction for snap_scaffold_25-snap.1624-T1
Valid prediction for Augustus_model.g37229.t1
Valid prediction for GlimmerHMM_glimmerT_55817-T1
Valid prediction for GeneMark_model.97325_t
Valid prediction for GeneMark_model.97330_t
Valid prediction for snap_scaffold_25-snap.1646-T1
Valid prediction for snap_scaffold_25-snap.1626-T1
Valid prediction for snap_scaffold_25-snap.1627-T1
Valid prediction for snap_scaffold_25-snap.1640-T1
Valid prediction for snap_scaffold_25-snap.1618-T1
Valid prediction for snap_scaffold_25-snap.1622-T1
Valid prediction for snap_scaffold_25-snap.1651-T1
Valid prediction for snap_scaffold_25-snap.1625-T1
Valid prediction for GlimmerHMM_glimmerT_55826-T1
Valid prediction for Augustus_model.g37233.t1
Valid prediction for snap_scaffold_25-snap.1615-T1
Valid prediction for snap_scaffold_25-snap.1650-T1
Valid prediction for GlimmerHMM_glimmerT_55823-T1
Valid prediction for Augustus_model.g37231.t1
Valid prediction for GeneMark_model.97320_t
Valid prediction for snap_scaffold_25-snap.1645-T1
Valid prediction for GeneMark_model.97314_t
Valid prediction for GeneMark_model.97331_t
Valid prediction for snap_scaffold_25-snap.1631-T1
Valid prediction for GeneMark_model.97329_t
Valid prediction for snap_scaffold_25-snap.1642-T1
Valid prediction for GlimmerHMM_glimmerT_55820-T1
Valid prediction for GlimmerHMM_glimmerT_55814-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_55830-T1
Valid prediction for GlimmerHMM_glimmerT_55828-T1
Valid prediction for Augustus_model.g37226.t1
Valid prediction for snap_scaffold_25-snap.1634-T1
Valid prediction for GeneMark_model.97321_t
Valid prediction for snap_scaffold_25-snap.1632-T1
Valid prediction for GeneMark_model.97324_t
Valid prediction for GeneMark_model.97311_t
Valid prediction for snap_scaffold_25-snap.1635-T1
Valid prediction for snap_scaffold_25-snap.1638-T1
Valid prediction for snap_scaffold_25-snap.1633-T1
Valid prediction for GeneMark_model.97310_t
Valid prediction for GeneMark_model.97309_t
Valid prediction for GlimmerHMM_glimmerT_55812-T1
Valid prediction for snap_scaffold_25-snap.1639-T1
Valid prediction for GeneMark_model.97315_t
Valid prediction for GlimmerHMM_glimmerT_55813-T1
Valid prediction for GeneMark_model.97336_t
Valid prediction for GlimmerHMM_glimmerT_55819-T1
Valid prediction for snap_scaffold_25-snap.1649-T1
Valid prediction for GeneMark_model.97323_t
Valid prediction for GlimmerHMM_glimmerT_55822-T1
Valid prediction for GlimmerHMM_glimmerT_55829-T1
Valid prediction for Augustus_model.g37228.t1
Valid prediction for GeneMark_model.97313_t
Valid prediction for GeneMark_model.97307_t
Valid prediction for GeneMark_model.97317_t
Valid prediction for snap_scaffold_25-snap.1637-T1
Valid prediction for snap_scaffold_25-snap.1629-T1
Valid prediction for GeneMark_model.97334_t
Valid prediction for snap_scaffold_25-snap.1647-T1
Valid prediction for GeneMark_model.97312_t
Valid prediction for Augustus_model.g37232.t1
Valid prediction for GlimmerHMM_glimmerT_55818-T1
Valid prediction for snap_scaffold_25-snap.1648-T1
Valid prediction for GeneMark_model.97319_t
Valid prediction for GeneMark_model.97335_t
Valid prediction for GlimmerHMM_glimmerT_55825-T1
Valid prediction for GlimmerHMM_glimmerT_55827-T1
Valid prediction for snap_scaffold_25-snap.1643-T1
Valid prediction for snap_scaffold_25-snap.1621-T1
Valid prediction for GeneMark_model.97326_t
Valid prediction for snap_scaffold_25-snap.1616-T1
Valid prediction for snap_scaffold_25-snap.1617-T1
Valid prediction for snap_scaffold_25-snap.1619-T1
Valid prediction for Augustus_model.g37230.t1
Valid prediction for Augustus_model.g37235.t1
Valid prediction for snap_scaffold_25-snap.1628-T1
Valid prediction for GlimmerHMM_glimmerT_55821-T1
Valid prediction for snap_scaffold_25-snap.1636-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 119406, rend_intergenic: 116934  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 152029
-exon list size: 345


building trellis

0.3    
0.6    
0.9    
1.2    
1.4    
1.7    
2.0    
2.3    
2.6    
2.9    
3.2    
3.5    
3.7    
4.0    
4.3    
4.6    
4.9    
5.2    
5.5    
5.8    
6.1    
6.3    
6.6    
6.9    
7.2    
7.5    
7.8    
8.1    
8.4    
8.6    
8.9    
9.2    
9.5    
9.8    
10.1    
10.4    
10.7    
11.0    
11.2    
11.5    
11.8    
12.1    
12.4    
12.7    
13.0    
13.3    
13.5    
13.8    
14.1    
14.4    
14.7    
15.0    
15.3    
15.6    
15.9    
16.1    
16.4    
16.7    
17.0    
17.3    
17.6    
17.9    
18.2    
18.4    
18.7    
19.0    
19.3    
19.6    
19.9    
20.2    
20.5    
20.7    
21.0    
21.3    
21.6    
21.9    
22.2    
22.5    
22.8    
23.1    
23.3    
23.6    
23.9    
24.2    
24.5    
24.8    
25.1    
25.4    
25.6    
25.9    
26.2    
26.5    
26.8    
27.1    
27.4    
27.7    
28.0    
28.2    
28.5    
28.8    
29.1    
29.4    
29.7    
30.0    
30.3    
30.5    
30.8    
31.1    
31.4    
31.7    
32.0    
32.3    
32.6    
32.9    
33.1    
33.4    
33.7    
34.0    
34.3    
34.6    
34.9    
35.2    
35.4    
35.7    
36.0    
36.3    
36.6    
36.9    
37.2    
37.5    
37.8    
38.0    
38.3    
38.6    
38.9    
39.2    
39.5    
39.8    
40.1    
40.3    
40.6    
40.9    
41.2    
41.5    
41.8    
42.1    
42.4    
42.7    
42.9    
43.2    
43.5    
43.8    
44.1    
44.4    
44.7    
45.0    
45.2    
45.5    
45.8    
46.1    
46.4    
46.7    
47.0    
47.3    
47.6    
47.8    
48.1    
48.4    
48.7    
49.0    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
51.0    
51.3    
51.6    
51.9    
52.2    
52.4    
52.7    
53.0    
53.3    
53.6    
53.9    
54.2    
54.5    
54.8    
55.0    
55.3    
55.6    
55.9    
56.2    
56.5    
56.8    
57.1    
57.3    
57.6    
57.9    
58.2    
58.5    
58.8    
59.1    
59.4    
59.7    
59.9    
60.2    
60.5    
60.8    
61.1    
61.4    
61.7    
62.0    
62.2    
62.5    
62.8    
63.1    
63.4    
63.7    
64.0    
64.3    
64.6    
64.8    
65.1    
65.4    
65.7    
66.0    
66.3    
66.6    
66.9    
67.1    
67.4    
67.7    
68.0    
68.3    
68.6    
68.9    
69.2    
69.5    
69.7    
70.0    
70.3    
70.6    
70.9    
71.2    
71.5    
71.8    
72.0    
72.3    
72.6    
72.9    
73.2    
73.5    
73.8    
74.1    
74.4    
74.6    
74.9    
75.2    
75.5    
75.8    
76.1    
76.4    
76.7    
76.9    
77.2    
77.5    
77.8    
78.1    
78.4    
78.7    
79.0    
79.3    
79.5    
79.8    
80.1    
80.4    
80.7    
81.0    
81.3    
81.6    
81.8    
82.1    
82.4    
82.7    
83.0    
83.3    
83.6    
83.9    
84.1    
84.4    
84.7    
85.0    
85.3    
85.6    
85.9    
86.2    
86.5    
86.7    
87.0    
87.3    
87.6    
87.9    
88.2    
88.5    
88.8    
89.0    
89.3    
89.6    
89.9    
90.2    
90.5    
90.8    
91.1    
91.4    
91.6    
91.9    
92.2    
92.5    
92.8    
93.1    
93.4    
93.7    
93.9    
94.2    
94.5    
94.8    
95.1    
95.4    
95.7    
96.0    
96.3    
96.5    
96.8    
97.1    
97.4    
97.7    
98.0    
98.3    
98.6    
98.8    
99.1    
99.4    
99.7    
-found 21 predictions from path traversal
Error with prediction: snap lend_intergenic: 119406, rend_intergenic: 116934  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support