-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_25/scaffold_25_6611209-6711748

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_25-snap.1424-T1
Valid prediction for GeneMark_model.97119_t
Valid prediction for Augustus_model.g37139.t1
Valid prediction for GeneMark_model.97100_t
Valid prediction for snap_scaffold_25-snap.1448-T1
Valid prediction for snap_scaffold_25-snap.1419-T1
Valid prediction for snap_scaffold_25-snap.1420-T1
Valid prediction for Augustus_model.g37135.t1
Valid prediction for Augustus_model.g37149.t1
Valid prediction for GlimmerHMM_glimmerT_55670-T1
Valid prediction for GlimmerHMM_glimmerT_55669-T1
Valid prediction for GlimmerHMM_glimmerT_55679-T1
Valid prediction for GeneMark_model.97096_t
Valid prediction for Augustus_model.g37146.t1
Valid prediction for snap_scaffold_25-snap.1430-T1
Valid prediction for snap_scaffold_25-snap.1422-T1
Valid prediction for GeneMark_model.97121_t
Valid prediction for GeneMark_model.97098_t
Valid prediction for Augustus_model.g37140.t1
Valid prediction for Augustus_model.g37147.t1
Valid prediction for GeneMark_model.97108_t
Valid prediction for GeneMark_model.97117_t
Valid prediction for snap_scaffold_25-snap.1428-T1
Valid prediction for snap_scaffold_25-snap.1449-T1
Valid prediction for snap_scaffold_25-snap.1411-T1
Valid prediction for GlimmerHMM_glimmerT_55655-T1
Valid prediction for GlimmerHMM_glimmerT_55661-T1
Valid prediction for snap_scaffold_25-snap.1440-T1
Valid prediction for GeneMark_model.97094_t
Valid prediction for Augustus_model.g37148.t1
Valid prediction for Augustus_model.g37144.t1
Valid prediction for GeneMark_model.97110_t
Valid prediction for GlimmerHMM_glimmerT_55665-T1
Valid prediction for snap_scaffold_25-snap.1435-T1
Valid prediction for GlimmerHMM_glimmerT_55656-T1
Valid prediction for snap_scaffold_25-snap.1429-T1
Valid prediction for snap_scaffold_25-snap.1439-T1
Valid prediction for snap_scaffold_25-snap.1442-T1
Valid prediction for GlimmerHMM_glimmerT_55664-T1
Valid prediction for GlimmerHMM_glimmerT_55674-T1
Valid prediction for Augustus_model.g37137.t1
Valid prediction for GeneMark_model.97089_t
Valid prediction for snap_scaffold_25-snap.1425-T1
Valid prediction for snap_scaffold_25-snap.1436-T1
Valid prediction for GeneMark_model.97088_t
Valid prediction for GeneMark_model.97113_t
Valid prediction for snap_scaffold_25-snap.1409-T1
Valid prediction for snap_scaffold_25-snap.1410-T1
Valid prediction for Augustus_model.g37133.t1
Valid prediction for GlimmerHMM_glimmerT_55681-T1
Valid prediction for GlimmerHMM_glimmerT_55668-T1
Valid prediction for snap_scaffold_25-snap.1444-T1
Valid prediction for GeneMark_model.97106_t
Valid prediction for GlimmerHMM_glimmerT_55678-T1
Valid prediction for GeneMark_model.97092_t
Valid prediction for Augustus_model.g37142.t1
Valid prediction for snap_scaffold_25-snap.1412-T1
Valid prediction for snap_scaffold_25-snap.1450-T1
Valid prediction for Augustus_model.g37145.t1
Valid prediction for GeneMark_model.97104_t
Valid prediction for GeneMark_model.97111_t
Valid prediction for snap_scaffold_25-snap.1414-T1
Valid prediction for GlimmerHMM_glimmerT_55673-T1
Valid prediction for GeneMark_model.97102_t
Valid prediction for snap_scaffold_25-snap.1415-T1
Valid prediction for GeneMark_model.97093_t
Valid prediction for GlimmerHMM_glimmerT_55675-T1
Valid prediction for GlimmerHMM_glimmerT_55662-T1
Valid prediction for GlimmerHMM_glimmerT_55682-T1
Valid prediction for GeneMark_model.97115_t
Valid prediction for snap_scaffold_25-snap.1418-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_55680-T1
Valid prediction for Augustus_model.g37143.t1
Valid prediction for GeneMark_model.97118_t
Valid prediction for snap_scaffold_25-snap.1437-T1
Valid prediction for GeneMark_model.97087_t
Valid prediction for snap_scaffold_25-snap.1432-T1
Valid prediction for snap_scaffold_25-snap.1445-T1
Valid prediction for GeneMark_model.97099_t
Valid prediction for snap_scaffold_25-snap.1447-T1
Valid prediction for GeneMark_model.97097_t
Valid prediction for snap_scaffold_25-snap.1417-T1
Valid prediction for GeneMark_model.97107_t
Valid prediction for snap_scaffold_25-snap.1423-T1
Valid prediction for GlimmerHMM_glimmerT_55672-T1
Valid prediction for GeneMark_model.97114_t
Valid prediction for snap_scaffold_25-snap.1443-T1
Valid prediction for GlimmerHMM_glimmerT_55677-T1
Valid prediction for snap_scaffold_25-snap.1421-T1
Valid prediction for GeneMark_model.97112_t
Valid prediction for GeneMark_model.97101_t
Valid prediction for snap_scaffold_25-snap.1438-T1
Valid prediction for snap_scaffold_25-snap.1446-T1
Valid prediction for GlimmerHMM_glimmerT_55666-T1
Valid prediction for GeneMark_model.97095_t
Valid prediction for GlimmerHMM_glimmerT_55667-T1
Valid prediction for GeneMark_model.97109_t
Valid prediction for Augustus_model.g37138.t1
Valid prediction for GeneMark_model.97090_t
Valid prediction for GlimmerHMM_glimmerT_55657-T1
Valid prediction for GeneMark_model.97103_t
Valid prediction for snap_scaffold_25-snap.1426-T1
Valid prediction for GlimmerHMM_glimmerT_55659-T1
Valid prediction for snap_scaffold_25-snap.1416-T1
Valid prediction for snap_scaffold_25-snap.1427-T1
Valid prediction for GeneMark_model.97105_t
Valid prediction for GeneMark_model.97122_t
Valid prediction for snap_scaffold_25-snap.1434-T1
Valid prediction for snap_scaffold_25-snap.1433-T1
Valid prediction for GlimmerHMM_glimmerT_55671-T1
Valid prediction for GlimmerHMM_glimmerT_55663-T1
Valid prediction for GlimmerHMM_glimmerT_55660-T1
Valid prediction for GlimmerHMM_glimmerT_55658-T1
Valid prediction for GlimmerHMM_glimmerT_55676-T1
Valid prediction for snap_scaffold_25-snap.1441-T1
Valid prediction for Augustus_model.g37141.t1
Valid prediction for Augustus_model.g37134.t1
Valid prediction for Augustus_model.g37136.t1
Valid prediction for snap_scaffold_25-snap.1431-T1
Valid prediction for GeneMark_model.97120_t
Valid prediction for snap_scaffold_25-snap.1413-T1
Valid prediction for GeneMark_model.97116_t
Valid prediction for GeneMark_model.97091_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10617, rend_intergenic: 8082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14884, rend_intergenic: 13886  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26531, rend_intergenic: 25030  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28759, rend_intergenic: 26744  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40154, rend_intergenic: 32753  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45824, rend_intergenic: 40391  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60181, rend_intergenic: 56480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72128, rend_intergenic: 68459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80501, rend_intergenic: 78828  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87129, rend_intergenic: 84236  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96612, rend_intergenic: 90607  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 100540
-exon list size: 520


building trellis

0.2    
0.4    
0.6    
0.8    
1.0    
1.1    
1.3    
1.5    
1.7    
1.9    
2.1    
2.3    
2.5    
2.7    
2.9    
3.1    
3.3    
3.4    
3.6    
3.8    
4.0    
4.2    
4.4    
4.6    
4.8    
5.0    
5.2    
5.4    
5.6    
5.7    
5.9    
6.1    
6.3    
6.5    
6.7    
6.9    
7.1    
7.3    
7.5    
7.7    
7.9    
8.0    
8.2    
8.4    
8.6    
8.8    
9.0    
9.2    
9.4    
9.6    
9.8    
10.0    
10.2    
10.3    
10.5    
10.7    
10.9    
11.1    
11.3    
11.5    
11.7    
11.9    
12.1    
12.3    
12.5    
12.6    
12.8    
13.0    
13.2    
13.4    
13.6    
13.8    
14.0    
14.2    
14.4    
14.6    
14.8    
14.9    
15.1    
15.3    
15.5    
15.7    
15.9    
16.1    
16.3    
16.5    
16.7    
16.9    
17.0    
17.2    
17.4    
17.6    
17.8    
18.0    
18.2    
18.4    
18.6    
18.8    
19.0    
19.2    
19.3    
19.5    
19.7    
19.9    
20.1    
20.3    
20.5    
20.7    
20.9    
21.1    
21.3    
21.5    
21.6    
21.8    
22.0    
22.2    
22.4    
22.6    
22.8    
23.0    
23.2    
23.4    
23.6    
23.8    
23.9    
24.1    
24.3    
24.5    
24.7    
24.9    
25.1    
25.3    
25.5    
25.7    
25.9    
26.1    
26.2    
26.4    
26.6    
26.8    
27.0    
27.2    
27.4    
27.6    
27.8    
28.0    
28.2    
28.4    
28.5    
28.7    
28.9    
29.1    
29.3    
29.5    
29.7    
29.9    
30.1    
30.3    
30.5    
30.7    
30.8    
31.0    
31.2    
31.4    
31.6    
31.8    
32.0    
32.2    
32.4    
32.6    
32.8    
33.0    
33.1    
33.3    
33.5    
33.7    
33.9    
34.1    
34.3    
34.5    
34.7    
34.9    
35.1    
35.2    
35.4    
35.6    
35.8    
36.0    
36.2    
36.4    
36.6    
36.8    
37.0    
37.2    
37.4    
37.5    
37.7    
37.9    
38.1    
38.3    
38.5    
38.7    
38.9    
39.1    
39.3    
39.5    
39.7    
39.8    
40.0    
40.2    
40.4    
40.6    
40.8    
41.0    
41.2    
41.4    
41.6    
41.8    
42.0    
42.1    
42.3    
42.5    
42.7    
42.9    
43.1    
43.3    
43.5    
43.7    
43.9    
44.1    
44.3    
44.4    
44.6    
44.8    
45.0    
45.2    
45.4    
45.6    
45.8    
46.0    
46.2    
46.4    
46.6    
46.7    
46.9    
47.1    
47.3    
47.5    
47.7    
47.9    
48.1    
48.3    
48.5    
48.7    
48.9    
49.0    
49.2    
49.4    
49.6    
49.8    
50.0    
50.2    
50.4    
50.6    
50.8    
51.0    
51.1    
51.3    
51.5    
51.7    
51.9    
52.1    
52.3    
52.5    
52.7    
52.9    
53.1    
53.3    
53.4    
53.6    
53.8    
54.0    
54.2    
54.4    
54.6    
54.8    
55.0    
55.2    
55.4    
55.6    
55.7    
55.9    
56.1    
56.3    
56.5    
56.7    
56.9    
57.1    
57.3    
57.5    
57.7    
57.9    
58.0    
58.2    
58.4    
58.6    
58.8    
59.0    
59.2    
59.4    
59.6    
59.8    
60.0    
60.2    
60.3    
60.5    
60.7    
60.9    
61.1    
61.3    
61.5    
61.7    
61.9    
62.1    
62.3    
62.5    
62.6    
62.8    
63.0    
63.2    
63.4    
63.6    
63.8    
64.0    
64.2    
64.4    
64.6    
64.8    
64.9    
65.1    
65.3    
65.5    
65.7    
65.9    
66.1    
66.3    
66.5    
66.7    
66.9    
67.0    
67.2    
67.4    
67.6    
67.8    
68.0    
68.2    
68.4    
68.6    
68.8    
69.0    
69.2    
69.3    
69.5    
69.7    
69.9    
70.1    
70.3    
70.5    
70.7    
70.9    
71.1    
71.3    
71.5    
71.6    
71.8    
72.0    
72.2    
72.4    
72.6    
72.8    
73.0    
73.2    
73.4    
73.6    
73.8    
73.9    
74.1    
74.3    
74.5    
74.7    
74.9    
75.1    
75.3    
75.5    
75.7    
75.9    
76.1    
76.2    
76.4    
76.6    
76.8    
77.0    
77.2    
77.4    
77.6    
77.8    
78.0    
78.2    
78.4    
78.5    
78.7    
78.9    
79.1    
79.3    
79.5    
79.7    
79.9    
80.1    
80.3    
80.5    
80.7    
80.8    
81.0    
81.2    
81.4    
81.6    
81.8    
82.0    
82.2    
82.4    
82.6    
82.8    
83.0    
83.1    
83.3    
83.5    
83.7    
83.9    
84.1    
84.3    
84.5    
84.7    
84.9    
85.1    
85.2    
85.4    
85.6    
85.8    
86.0    
86.2    
86.4    
86.6    
86.8    
87.0    
87.2    
87.4    
87.5    
87.7    
87.9    
88.1    
88.3    
88.5    
88.7    
88.9    
89.1    
89.3    
89.5    
89.7    
89.8    
90.0    
90.2    
90.4    
90.6    
90.8    
91.0    
91.2    
91.4    
91.6    
91.8    
92.0    
92.1    
92.3    
92.5    
92.7    
92.9    
93.1    
93.3    
93.5    
93.7    
93.9    
94.1    
94.3    
94.4    
94.6    
94.8    
95.0    
95.2    
95.4    
95.6    
95.8    
96.0    
96.2    
96.4    
96.6    
96.7    
96.9    
97.1    
97.3    
97.5    
97.7    
97.9    
98.1    
98.3    
98.5    
98.7    
98.9    
99.0    
99.2    
99.4    
99.6    
99.8    
-found 35 predictions from path traversal
Error with prediction: snap lend_intergenic: 10617, rend_intergenic: 8082  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14884, rend_intergenic: 13886  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26531, rend_intergenic: 25030  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28759, rend_intergenic: 26744  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40154, rend_intergenic: 32753  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45824, rend_intergenic: 40391  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60181, rend_intergenic: 56480  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72128, rend_intergenic: 68459  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80501, rend_intergenic: 78828  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87129, rend_intergenic: 84236  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96612, rend_intergenic: 90607  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support