-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_25/scaffold_25_5882695-6228145

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_55558-T1
Valid prediction for GlimmerHMM_glimmerT_55578-T1
Valid prediction for snap_scaffold_25-snap.1288-T1
Valid prediction for Augustus_model.g37091.t1
Valid prediction for snap_scaffold_25-snap.1303-T1
Valid prediction for Augustus_model.g37075.t1
Valid prediction for Augustus_model.g37089.t1
Valid prediction for GeneMark_model.96972_t
Valid prediction for Augustus_model.g37074.t1
Valid prediction for GeneMark_model.96973_t
Couldn't classify 209788, 210231
Sorry, prediction pasa_asmbl_33904.p1 fails validation.
(ATG)	 TC	208171-208180	GT	TGG
(TGT)	 AG	208659-208819	GT	CGG
(AGA)	 AG	209788-210231	CA	GCC
-recovered pasa_asmbl_33904.p1, initial, 208171, 208180
-recovered pasa_asmbl_33904.p1, internal, 208659, 208819
Valid prediction for snap_scaffold_25-snap.1299-T1
Valid prediction for snap_scaffold_25-snap.1295-T1
Valid prediction for Augustus_model.g37067.t1
Valid prediction for snap_scaffold_25-snap.1276-T1
Valid prediction for snap_scaffold_25-snap.1272-T1
Valid prediction for Augustus_model.g37080.t1
Valid prediction for HiQ_model.g37073.t1
Valid prediction for GeneMark_model.96951_t
Valid prediction for GeneMark_model.96962_t
Valid prediction for snap_scaffold_25-snap.1287-T1
Valid prediction for snap_scaffold_25-snap.1305-T1
Valid prediction for GeneMark_model.96965_t
Valid prediction for CodingQuarry_transcript_38662-T1
Valid prediction for snap_scaffold_25-snap.1260-T1
Couldn't classify 281528, 283174
Sorry, prediction pasa_asmbl_33594.p1 fails validation.
(ATG)	 TA	281528-283174	CA	GCC
Couldn't classify 198132, 198852
Sorry, prediction pasa_asmbl_33591.p1 fails validation.
(TCC)	 CT	198132-198852	GT	GGG
(CCC)	 AG	199255-199415	GT	GGG
(CCT)	 AG	199673-199766	GT	AGG
(GGA)	 AG	199944-200027	GT	AGG
(AAG)	 AG	200370-200515	GT	GAG
-recovered pasa_asmbl_33591.p1, terminal, 200370, 200515
-recovered pasa_asmbl_33591.p1, internal, 199255, 199415
-recovered pasa_asmbl_33591.p1, internal, 199673, 199766
-recovered pasa_asmbl_33591.p1, internal, 199944, 200027
-recovered pasa_asmbl_33591.p1, internal, 200370, 200515
Valid prediction for snap_scaffold_25-snap.1301-T1
Valid prediction for GeneMark_model.96960_t
Valid prediction for GlimmerHMM_glimmerT_55557-T1
Valid prediction for GeneMark_model.96967_t
Valid prediction for GeneMark_model.96975_t
Valid prediction for GeneMark_model.96954_t
Valid prediction for GeneMark_model.96971_t
Valid prediction for HiQ_model.g37082.t1
Valid prediction for snap_scaffold_25-snap.1271-T1
Valid prediction for GlimmerHMM_glimmerT_55573-T1
Valid prediction for GlimmerHMM_glimmerT_55550-T1
Valid prediction for GeneMark_model.96970_t
Valid prediction for snap_scaffold_25-snap.1297-T1
Valid prediction for GlimmerHMM_glimmerT_55553-T1
Valid prediction for GeneMark_model.96945_t
Valid prediction for Augustus_model.g37084.t1
Valid prediction for GlimmerHMM_glimmerT_55576-T1
Valid prediction for Augustus_model.g37070.t1
Valid prediction for Augustus_model.g37071.t1
Valid prediction for snap_scaffold_25-snap.1267-T1
Valid prediction for snap_scaffold_25-snap.1307-T1
Valid prediction for GlimmerHMM_glimmerT_55571-T1
Couldn't classify 287322, 287438
Couldn't classify 293228, 293343
Sorry, prediction pasa_asmbl_33852.p1 fails validation.
(GGC)	 GC	287322-287438	GT	AGG
(ACA)	 AG	288735-288831	GT	AGG
(AAA)	 AG	289005-289112	GT	CGG
(GTG)	 AG	290471-290524	GT	AGG
(AAA)	 AG	293228-293343	CA	CCC
add_exon() Sorry, pasa_asmbl_33852.p1 288735-288831-terminal-3 is invalid.
-recovered pasa_asmbl_33852.p1, terminal, 288735, 288831
add_exon() Sorry, pasa_asmbl_33852.p1 290471-290524-terminal-1 is invalid.
-recovered pasa_asmbl_33852.p1, terminal, 290471, 290524
-recovered pasa_asmbl_33852.p1, internal, 288735, 288831
-recovered pasa_asmbl_33852.p1, internal, 289005, 289112
-recovered pasa_asmbl_33852.p1, internal, 290471, 290524
Valid prediction for GeneMark_model.96949_t
Valid prediction for GeneMark_model.96952_t
Valid prediction for GeneMark_model.96978_t
Valid prediction for snap_scaffold_25-snap.1265-T1
Valid prediction for GlimmerHMM_glimmerT_55583-T1
Valid prediction for GlimmerHMM_glimmerT_55555-T1
Valid prediction for Augustus_model.g37088.t1
Valid prediction for snap_scaffold_25-snap.1266-T1
Valid prediction for GlimmerHMM_glimmerT_55577-T1
Valid prediction for Augustus_model.g37066.t1
Valid prediction for snap_scaffold_25-snap.1268-T1
Valid prediction for GeneMark_model.96941_t
Valid prediction for GlimmerHMM_glimmerT_55581-T1
Valid prediction for GeneMark_model.96942_t
Valid prediction for pasa_asmbl_33587.p1
Valid prediction for GeneMark_model.96943_t
Valid prediction for snap_scaffold_25-snap.1261-T1
Valid prediction for HiQ_model.g37090.t1
Valid prediction for Augustus_model.g37092.t1
Valid prediction for GeneMark_model.96979_t
Valid prediction for GlimmerHMM_glimmerT_55567-T1
Valid prediction for snap_scaffold_25-snap.1300-T1
Valid prediction for snap_scaffold_25-snap.1275-T1
Valid prediction for snap_scaffold_25-snap.1308-T1
Valid prediction for GeneMark_model.96946_t
Valid prediction for snap_scaffold_25-snap.1298-T1
Valid prediction for snap_scaffold_25-snap.1291-T1
Valid prediction for GeneMark_model.96948_t
Valid prediction for GlimmerHMM_glimmerT_55569-T1
Valid prediction for snap_scaffold_25-snap.1285-T1
Valid prediction for GlimmerHMM_glimmerT_55582-T1
Valid prediction for snap_scaffold_25-snap.1302-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_25-snap.1294-T1
Valid prediction for GlimmerHMM_glimmerT_55560-T1
Valid prediction for snap_scaffold_25-snap.1306-T1
Valid prediction for GeneMark_model.96961_t
Couldn't classify 82255, 82620
Sorry, prediction pasa_asmbl_34309.p2 fails validation.
(AGG)	 TG	82255-82620	TG	CGT
Valid prediction for snap_scaffold_25-snap.1280-T1
Valid prediction for pasa_asmbl_34270.p1
Valid prediction for HiQ_model.g37083.t1
Valid prediction for snap_scaffold_25-snap.1293-T1
Valid prediction for snap_scaffold_25-snap.1278-T1
Valid prediction for Augustus_model.g37076.t1
Valid prediction for GlimmerHMM_glimmerT_55566-T1
Valid prediction for pasa_asmbl_34286.p1
Valid prediction for snap_scaffold_25-snap.1273-T1
Valid prediction for pasa_asmbl_34304.p1
Valid prediction for CodingQuarry_transcript_38664-T1
Valid prediction for GlimmerHMM_glimmerT_55568-T1
Couldn't classify 208578, 208812
Couldn't classify 211697, 211929
Sorry, prediction pasa_asmbl_34571.p1 fails validation.
(AGT)	 AG	208578-208812	GT	GGG
(AGC)	 AG	211697-211929	GG	GGG
-recovered pasa_asmbl_34571.p1, internal, 208578, 208812
Valid prediction for GeneMark_model.96950_t
Couldn't classify 209324, 209475
Sorry, prediction pasa_asmbl_34275.p1 fails validation.
(ATG)	 AC	201105-201222	GT	CGG
(CTT)	 AG	201757-202032	GT	GGG
(GAC)	 AG	202141-202407	GT	GGG
(GCC)	 AG	202734-203000	GT	TGG
(AGC)	 AG	203205-203471	GT	AGG
(CTA)	 AG	203579-203845	GT	AGG
(CTC)	 AG	203979-204245	GT	AGG
(CTC)	 AG	204503-204769	GT	CGG
(CCA)	 AG	204938-205204	GT	AGG
(CTG)	 AG	205414-205683	GT	AGG
(AGC)	 AG	205891-206169	GT	GGG
(TCT)	 AG	206478-206735	GT	AGG
(AGC)	 AG	209324-209475	AA	TGA
-recovered pasa_asmbl_34275.p1, initial, 201105, 201222
-recovered pasa_asmbl_34275.p1, internal, 201757, 202032
-recovered pasa_asmbl_34275.p1, internal, 202141, 202407
-recovered pasa_asmbl_34275.p1, internal, 202734, 203000
-recovered pasa_asmbl_34275.p1, internal, 203205, 203471
-recovered pasa_asmbl_34275.p1, internal, 203579, 203845
-recovered pasa_asmbl_34275.p1, internal, 203979, 204245
-recovered pasa_asmbl_34275.p1, internal, 204503, 204769
-recovered pasa_asmbl_34275.p1, internal, 204938, 205204
-recovered pasa_asmbl_34275.p1, internal, 205414, 205683
-recovered pasa_asmbl_34275.p1, internal, 205891, 206169
-recovered pasa_asmbl_34275.p1, internal, 206478, 206735
Valid prediction for GlimmerHMM_glimmerT_55551-T1
Valid prediction for GlimmerHMM_glimmerT_55559-T1
Valid prediction for snap_scaffold_25-snap.1283-T1
Valid prediction for Augustus_model.g37081.t1
Valid prediction for GlimmerHMM_glimmerT_55565-T1
Valid prediction for snap_scaffold_25-snap.1289-T1
Valid prediction for pasa_asmbl_34287.p1
Valid prediction for HiQ_model.g37086.t1
Valid prediction for GeneMark_model.96955_t
Valid prediction for GlimmerHMM_glimmerT_55580-T1
Valid prediction for CodingQuarry_transcript_38663-T1
Valid prediction for snap_scaffold_25-snap.1277-T1
Valid prediction for pasa_asmbl_34298.p1
Valid prediction for GlimmerHMM_glimmerT_55552-T1
Valid prediction for snap_scaffold_25-snap.1309-T1
Valid prediction for snap_scaffold_25-snap.1292-T1
Valid prediction for snap_scaffold_25-snap.1304-T1
Couldn't classify 208705, 208765
Couldn't classify 211100, 211146
Sorry, prediction CodingQuarry_transcript_38665-T1 fails validation.
(ATG)	 GG	208705-208765	CT	ACC
(CTG)	 AC	211100-211146	GT	GGG
(AGC)	 AG	211697-211825	AG	GAA
-recovered CodingQuarry_transcript_38665-T1, terminal, 211697, 211825
Couldn't classify 199454, 199712
Couldn't classify 200086, 200351
Sorry, prediction pasa_asmbl_34276.p1 fails validation.
(GCT)	 CT	199454-199712	GT	AGG
(CGA)	 AG	200086-200351	GG	CCG
Valid prediction for snap_scaffold_25-snap.1279-T1
Valid prediction for snap_scaffold_25-snap.1263-T1
Valid prediction for CodingQuarry_transcript_38668-T1
Couldn't classify 194662, 194701
Couldn't classify 195284, 195528
Sorry, prediction pasa_asmbl_34279.p1 fails validation.
(GCC)	 CT	194662-194701	GT	GGG
(AGC)	 AG	194790-195056	GT	AGG
(TTC)	 AG	195284-195528	GT	CCG
-recovered pasa_asmbl_34279.p1, internal, 194790, 195056
-recovered pasa_asmbl_34279.p1, internal, 195284, 195528
Valid prediction for GlimmerHMM_glimmerT_55574-T1
Couldn't classify 82741, 82828
Couldn't classify 84829, 84897
Sorry, prediction pasa_asmbl_34308.p1 fails validation.
(GGG)	 AA	82741-82828	GT	AGG
(GCC)	 AG	83578-83747	GT	AGG
(GCC)	 AG	84313-84357	GT	AGG
(GAA)	 AG	84503-84619	GT	AGG
(CTA)	 AG	84829-84897	AA	ACA
-recovered pasa_asmbl_34308.p1, internal, 83578, 83747
-recovered pasa_asmbl_34308.p1, internal, 84313, 84357
-recovered pasa_asmbl_34308.p1, internal, 84503, 84619
Valid prediction for GlimmerHMM_glimmerT_55556-T1
Valid prediction for GlimmerHMM_glimmerT_55554-T1
Valid prediction for Augustus_model.g37072.t1
Valid prediction for GlimmerHMM_glimmerT_55561-T1
Valid prediction for CodingQuarry_transcript_38666-T1
Valid prediction for GeneMark_model.96953_t
Valid prediction for Augustus_model.g37069.t1
Valid prediction for snap_scaffold_25-snap.1290-T1
Valid prediction for snap_scaffold_25-snap.1284-T1
Valid prediction for GeneMark_model.96956_t
Valid prediction for GlimmerHMM_glimmerT_55570-T1
Valid prediction for snap_scaffold_25-snap.1274-T1
Couldn't classify 116708, 116816
Couldn't classify 121986, 122067
Sorry, prediction pasa_asmbl_34302.p1 fails validation.
(TGT)	 AT	116708-116816	GT	GGG
(TGG)	 AG	119467-119594	GT	AGG
(AAG)	 AG	120368-120457	GT	GGG
(AAT)	 AG	120745-120785	GT	AGG
(AAT)	 AG	120905-120996	GT	GGG
(GTG)	 AG	121083-121210	GT	ACG
(ACG)	 AG	121298-121393	GT	AAG
(TAC)	 AG	121480-121630	GT	AGG
(GTC)	 AG	121761-121878	GT	AGG
(CGC)	 AG	121986-122067	CA	GTC
-recovered pasa_asmbl_34302.p1, internal, 119467, 119594
-recovered pasa_asmbl_34302.p1, internal, 120368, 120457
-recovered pasa_asmbl_34302.p1, internal, 120745, 120785
-recovered pasa_asmbl_34302.p1, internal, 120905, 120996
-recovered pasa_asmbl_34302.p1, internal, 121083, 121210
-recovered pasa_asmbl_34302.p1, internal, 121298, 121393
-recovered pasa_asmbl_34302.p1, internal, 121480, 121630
-recovered pasa_asmbl_34302.p1, internal, 121761, 121878
Valid prediction for CodingQuarry_transcript_38667-T1
Valid prediction for HiQ_model.g37079.t1
Valid prediction for GlimmerHMM_glimmerT_55575-T1
Couldn't classify 196324, 196504
Couldn't classify 197328, 197485
Sorry, prediction pasa_asmbl_34278.p1 fails validation.
(GTT)	 AG	196324-196504	GT	AGG
(AGA)	 AG	196757-197023	GT	AGG
(AGC)	 AG	197328-197485	AA	AGA
-recovered pasa_asmbl_34278.p1, internal, 196324, 196504
-recovered pasa_asmbl_34278.p1, internal, 196757, 197023
Valid prediction for GeneMark_model.96974_t
Valid prediction for snap_scaffold_25-snap.1262-T1
Valid prediction for snap_scaffold_25-snap.1282-T1
Valid prediction for GlimmerHMM_glimmerT_55564-T1
Valid prediction for snap_scaffold_25-snap.1296-T1
Valid prediction for pasa_asmbl_34299.p1
Valid prediction for GeneMark_model.96976_t
Valid prediction for GlimmerHMM_glimmerT_55579-T1
Valid prediction for Augustus_model.g37087.t1
Valid prediction for snap_scaffold_25-snap.1264-T1
Valid prediction for GeneMark_model.96947_t
Valid prediction for Augustus_model.g37077.t1
Valid prediction for Augustus_model.g37085.t1
Valid prediction for snap_scaffold_25-snap.1286-T1
Couldn't classify 188053, 188215
Sorry, prediction pasa_asmbl_34283.p1 fails validation.
(TTG)	 GG	188053-188215	GT	CGG
(TCA)	 AG	188867-189105	GT	AGG
(AGC)	 AG	189197-189316	AC	AAA
-recovered pasa_asmbl_34283.p1, terminal, 189197, 189316
-recovered pasa_asmbl_34283.p1, internal, 188867, 189105
Valid prediction for GeneMark_model.96944_t
Couldn't classify 185544, 185680
Couldn't classify 187063, 187141
Sorry, prediction pasa_asmbl_34284.p1 fails validation.
(CGG)	 GA	185544-185680	GT	CAG
(CGA)	 AG	185852-185936	GT	AGG
(TTA)	 AG	186027-186137	GT	AGG
(GAG)	 AG	186318-186393	GT	AGG
(AGG)	 AG	186492-186598	GT	AGG
(GTG)	 AG	186701-186787	GT	AGG
(AAA)	 AG	186886-186947	GT	AGG
(GAC)	 AG	187063-187141	GT	ACG
-recovered pasa_asmbl_34284.p1, internal, 185852, 185936
-recovered pasa_asmbl_34284.p1, internal, 186027, 186137
-recovered pasa_asmbl_34284.p1, internal, 186318, 186393
-recovered pasa_asmbl_34284.p1, internal, 186492, 186598
-recovered pasa_asmbl_34284.p1, internal, 186701, 186787
-recovered pasa_asmbl_34284.p1, internal, 186886, 186947
-recovered pasa_asmbl_34284.p1, internal, 187063, 187141
Valid prediction for GlimmerHMM_glimmerT_55572-T1
Valid prediction for Augustus_model.g37068.t1
Valid prediction for GeneMark_model.96957_t
Valid prediction for GeneMark_model.96964_t
Valid prediction for GeneMark_model.96966_t
Valid prediction for GeneMark_model.96959_t
Valid prediction for GeneMark_model.96958_t
Valid prediction for GeneMark_model.96968_t
Valid prediction for GlimmerHMM_glimmerT_55563-T1
Valid prediction for GeneMark_model.96977_t
Couldn't classify 112239, 112391
Couldn't classify 112651, 112839
Sorry, prediction pasa_asmbl_34303.p1 fails validation.
(TTG)	 AG	112239-112391	GT	AGG
(GGG)	 AG	112651-112839	GG	CAG
-recovered pasa_asmbl_34303.p1, internal, 112239, 112391
Valid prediction for GeneMark_model.96969_t
Valid prediction for snap_scaffold_25-snap.1270-T1
Valid prediction for GlimmerHMM_glimmerT_55562-T1
Valid prediction for snap_scaffold_25-snap.1269-T1
Valid prediction for HiQ_model.g37078.t1
Valid prediction for snap_scaffold_25-snap.1281-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 311800, rend_intergenic: 307533  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 339015, rend_intergenic: 334755  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 345451
-exon list size: 767


building trellis

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35.8    
35.9    
36.0    
36.2    
36.3    
36.4    
36.5    
36.7    
36.8    
36.9    
37.1    
37.2    
37.3    
37.5    
37.6    
37.7    
37.8    
38.0    
38.1    
38.2    
38.4    
38.5    
38.6    
38.8    
38.9    
39.0    
39.1    
39.3    
39.4    
39.5    
39.7    
39.8    
39.9    
40.1    
40.2    
40.3    
40.4    
40.6    
40.7    
40.8    
41.0    
41.1    
41.2    
41.4    
41.5    
41.6    
41.7    
41.9    
42.0    
42.1    
42.3    
42.4    
42.5    
42.7    
42.8    
42.9    
43.0    
43.2    
43.3    
43.4    
43.6    
43.7    
43.8    
44.0    
44.1    
44.2    
44.3    
44.5    
44.6    
44.7    
44.9    
45.0    
45.1    
45.3    
45.4    
45.5    
45.6    
45.8    
45.9    
46.0    
46.2    
46.3    
46.4    
46.6    
46.7    
46.8    
46.9    
47.1    
47.2    
47.3    
47.5    
47.6    
47.7    
47.9    
48.0    
48.1    
48.2    
48.4    
48.5    
48.6    
48.8    
48.9    
49.0    
49.2    
49.3    
49.4    
49.5    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.5    
50.6    
50.7    
50.8    
51.0    
51.1    
51.2    
51.4    
51.5    
51.6    
51.8    
51.9    
52.0    
52.1    
52.3    
52.4    
52.5    
52.7    
52.8    
52.9    
53.1    
53.2    
53.3    
53.4    
53.6    
53.7    
53.8    
54.0    
54.1    
54.2    
54.4    
54.5    
54.6    
54.7    
54.9    
55.0    
55.1    
55.3    
55.4    
55.5    
55.7    
55.8    
55.9    
56.0    
56.2    
56.3    
56.4    
56.6    
56.7    
56.8    
57.0    
57.1    
57.2    
57.3    
57.5    
57.6    
57.7    
57.9    
58.0    
58.1    
58.3    
58.4    
58.5    
58.6    
58.8    
58.9    
59.0    
59.2    
59.3    
59.4    
59.6    
59.7    
59.8    
59.9    
60.1    
60.2    
60.3    
60.5    
60.6    
60.7    
60.9    
61.0    
61.1    
61.2    
61.4    
61.5    
61.6    
61.8    
61.9    
62.0    
62.2    
62.3    
62.4    
62.5    
62.7    
62.8    
62.9    
63.1    
63.2    
63.3    
63.5    
63.6    
63.7    
63.8    
64.0    
64.1    
64.2    
64.4    
64.5    
64.6    
64.8    
64.9    
65.0    
65.1    
65.3    
65.4    
65.5    
65.7    
65.8    
65.9    
66.1    
66.2    
66.3    
66.4    
66.6    
66.7    
66.8    
67.0    
67.1    
67.2    
67.4    
67.5    
67.6    
67.8    
67.9    
68.0    
68.1    
68.3    
68.4    
68.5    
68.7    
68.8    
68.9    
69.1    
69.2    
69.3    
69.4    
69.6    
69.7    
69.8    
70.0    
70.1    
70.2    
70.4    
70.5    
70.6    
70.7    
70.9    
71.0    
71.1    
71.3    
71.4    
71.5    
71.7    
71.8    
71.9    
72.0    
72.2    
72.3    
72.4    
72.6    
72.7    
72.8    
73.0    
73.1    
73.2    
73.3    
73.5    
73.6    
73.7    
73.9    
74.0    
74.1    
74.3    
74.4    
74.5    
74.6    
74.8    
74.9    
75.0    
75.2    
75.3    
75.4    
75.6    
75.7    
75.8    
75.9    
76.1    
76.2    
76.3    
76.5    
76.6    
76.7    
76.9    
77.0    
77.1    
77.2    
77.4    
77.5    
77.6    
77.8    
77.9    
78.0    
78.2    
78.3    
78.4    
78.5    
78.7    
78.8    
78.9    
79.1    
79.2    
79.3    
79.5    
79.6    
79.7    
79.8    
80.0    
80.1    
80.2    
80.4    
80.5    
80.6    
80.8    
80.9    
81.0    
81.1    
81.3    
81.4    
81.5    
81.7    
81.8    
81.9    
82.1    
82.2    
82.3    
82.4    
82.6    
82.7    
82.8    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.7    
83.9    
84.0    
84.1    
84.3    
84.4    
84.5    
84.7    
84.8    
84.9    
85.0    
85.2    
85.3    
85.4    
85.6    
85.7    
85.8    
86.0    
86.1    
86.2    
86.3    
86.5    
86.6    
86.7    
86.9    
87.0    
87.1    
87.3    
87.4    
87.5    
87.6    
87.8    
87.9    
88.0    
88.2    
88.3    
88.4    
88.6    
88.7    
88.8    
88.9    
89.1    
89.2    
89.3    
89.5    
89.6    
89.7    
89.9    
90.0    
90.1    
90.2    
90.4    
90.5    
90.6    
90.8    
90.9    
91.0    
91.2    
91.3    
91.4    
91.5    
91.7    
91.8    
91.9    
92.1    
92.2    
92.3    
92.5    
92.6    
92.7    
92.8    
93.0    
93.1    
93.2    
93.4    
93.5    
93.6    
93.8    
93.9    
94.0    
94.1    
94.3    
94.4    
94.5    
94.7    
94.8    
94.9    
95.1    
95.2    
95.3    
95.4    
95.6    
95.7    
95.8    
96.0    
96.1    
96.2    
96.4    
96.5    
96.6    
96.7    
96.9    
97.0    
97.1    
97.3    
97.4    
97.5    
97.7    
97.8    
97.9    
98.0    
98.2    
98.3    
98.4    
98.6    
98.7    
98.8    
99.0    
99.1    
99.2    
99.3    
99.5    
99.6    
99.7    
99.9    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 311800, rend_intergenic: 307533  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 339015, rend_intergenic: 334755  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 30 predictions persist after filtering for low support