-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_25/scaffold_25_2932160-3195856

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.96218_t
Valid prediction for GeneMark_model.96207_t
Valid prediction for snap_scaffold_25-snap.631-T1
Valid prediction for snap_scaffold_25-snap.654-T1
Valid prediction for GeneMark_model.96221_t
Valid prediction for GlimmerHMM_glimmerT_55113-T1
Valid prediction for GlimmerHMM_glimmerT_55110-T1
Valid prediction for GeneMark_model.96239_t
Valid prediction for GeneMark_model.96249_t
Valid prediction for GeneMark_model.96189_t
Valid prediction for GlimmerHMM_glimmerT_55130-T1
Valid prediction for GlimmerHMM_glimmerT_55127-T1
Valid prediction for snap_scaffold_25-snap.658-T1
Valid prediction for GeneMark_model.96268_t
Valid prediction for Augustus_model.g36763.t1
Valid prediction for snap_scaffold_25-snap.648-T1
Valid prediction for GeneMark_model.96247_t
Valid prediction for GeneMark_model.96246_t
Valid prediction for GeneMark_model.96253_t
Valid prediction for GlimmerHMM_glimmerT_55119-T1
Valid prediction for GeneMark_model.96267_t
Valid prediction for snap_scaffold_25-snap.640-T1
Valid prediction for GeneMark_model.96255_t
Valid prediction for GlimmerHMM_glimmerT_55109-T1
Valid prediction for GeneMark_model.96240_t
Valid prediction for GeneMark_model.96195_t
Valid prediction for snap_scaffold_25-snap.642-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GeneMark_model.96228_t
Valid prediction for GeneMark_model.96191_t
Valid prediction for GeneMark_model.96277_t
Valid prediction for Augustus_model.g36775.t1
Valid prediction for snap_scaffold_25-snap.620-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_25-snap.617-T1
Valid prediction for GeneMark_model.96180_t
Valid prediction for GlimmerHMM_glimmerT_55116-T1
Valid prediction for GeneMark_model.96200_t
Valid prediction for GeneMark_model.96266_t
Valid prediction for snap_scaffold_25-snap.643-T1
Valid prediction for GeneMark_model.96193_t
Valid prediction for GeneMark_model.96197_t
Valid prediction for Augustus_model.g36767.t1
Valid prediction for GeneMark_model.96205_t
Valid prediction for GeneMark_model.96187_t
Valid prediction for GeneMark_model.96279_t
Valid prediction for snap_scaffold_25-snap.627-T1
Valid prediction for snap_scaffold_25-snap.633-T1
Valid prediction for GeneMark_model.96244_t
Valid prediction for GeneMark_model.96214_t
Valid prediction for GeneMark_model.96194_t
Valid prediction for GeneMark_model.96262_t
Valid prediction for GeneMark_model.96212_t
Valid prediction for GeneMark_model.96229_t
Valid prediction for GeneMark_model.96208_t
Valid prediction for GeneMark_model.96181_t
Valid prediction for GeneMark_model.96251_t
Valid prediction for snap_scaffold_25-snap.625-T1
Valid prediction for GeneMark_model.96242_t
Valid prediction for GeneMark_model.96223_t
Valid prediction for GlimmerHMM_glimmerT_55102-T1
Valid prediction for snap_scaffold_25-snap.646-T1
Valid prediction for snap_scaffold_25-snap.657-T1
Valid prediction for snap_scaffold_25-snap.621-T1
Valid prediction for GeneMark_model.96238_t
Valid prediction for GeneMark_model.96199_t
Valid prediction for snap_scaffold_25-snap.635-T1
Valid prediction for snap_scaffold_25-snap.656-T1
Valid prediction for GlimmerHMM_glimmerT_55115-T1
Valid prediction for GeneMark_model.96220_t
Valid prediction for GeneMark_model.96264_t
Valid prediction for snap_scaffold_25-snap.639-T1
Valid prediction for GeneMark_model.96232_t
Valid prediction for snap_scaffold_25-snap.655-T1
Valid prediction for snap_scaffold_25-snap.629-T1
Valid prediction for GlimmerHMM_glimmerT_55128-T1
Valid prediction for snap_scaffold_25-snap.624-T1
Valid prediction for snap_scaffold_25-snap.652-T1
Valid prediction for GeneMark_model.96270_t
Valid prediction for GeneMark_model.96216_t
Valid prediction for snap_scaffold_25-snap.623-T1
Valid prediction for Augustus_model.g36766.t1
Valid prediction for GeneMark_model.96234_t
Valid prediction for GeneMark_model.96226_t
Valid prediction for GeneMark_model.96241_t
Valid prediction for GlimmerHMM_glimmerT_55126-T1
Valid prediction for GeneMark_model.96276_t
Valid prediction for GeneMark_model.96202_t
Valid prediction for GlimmerHMM_glimmerT_55107-T1
Valid prediction for GeneMark_model.96274_t
Valid prediction for GlimmerHMM_glimmerT_55111-T1
Valid prediction for GeneMark_model.96224_t
Valid prediction for GlimmerHMM_glimmerT_55114-T1
Valid prediction for GeneMark_model.96235_t
Valid prediction for GeneMark_model.96185_t
Valid prediction for GeneMark_model.96183_t
Valid prediction for GeneMark_model.96178_t
Valid prediction for GeneMark_model.96258_t
Valid prediction for GeneMark_model.96210_t
Valid prediction for snap_scaffold_25-snap.661-T1
Valid prediction for GlimmerHMM_glimmerT_55117-T1
Valid prediction for GeneMark_model.96209_t
Valid prediction for snap_scaffold_25-snap.638-T1
Valid prediction for snap_scaffold_25-snap.650-T1
Valid prediction for GlimmerHMM_glimmerT_55124-T1
Valid prediction for GeneMark_model.96272_t
Valid prediction for GeneMark_model.96284_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.96186_t
Valid prediction for GeneMark_model.96203_t
Valid prediction for GeneMark_model.96179_t
Valid prediction for GlimmerHMM_glimmerT_55123-T1
Valid prediction for snap_scaffold_25-snap.651-T1
Valid prediction for GeneMark_model.96257_t
Valid prediction for GeneMark_model.96280_t
Valid prediction for snap_scaffold_25-snap.628-T1
Valid prediction for GeneMark_model.96281_t
Couldn't classify 236260, 236371
Couldn't classify 240290, 240819
Sorry, prediction pasa_asmbl_34063.p1 fails validation.
(GAC)	 AG	236260-236371	GT	ACG
(CTG)	 AG	236733-236939	GT	TGG
(ACC)	 AG	237100-237317	GT	GGG
(CAC)	 AG	237614-237736	GT	AGG
(AGT)	 AG	238301-238437	GT	AGG
(CAG)	 AG	239313-239503	GT	TGG
(TGG)	 AG	240290-240819	TG	AGT
-recovered pasa_asmbl_34063.p1, internal, 236260, 236371
-recovered pasa_asmbl_34063.p1, internal, 236733, 236939
-recovered pasa_asmbl_34063.p1, internal, 237100, 237317
-recovered pasa_asmbl_34063.p1, internal, 237614, 237736
-recovered pasa_asmbl_34063.p1, internal, 238301, 238437
-recovered pasa_asmbl_34063.p1, internal, 239313, 239503
Valid prediction for GeneMark_model.96196_t
Valid prediction for Augustus_model.g36761.t1
Valid prediction for GeneMark_model.96245_t
Couldn't classify 74310, 74483
Couldn't classify 76348, 76401
Sorry, prediction pasa_asmbl_34091.p1 fails validation.
(GCC)	 TC	74310-74483	GT	AGG
(GAG)	 AG	74647-74789	GT	AGG
(AGT)	 AG	75413-75548	GT	AGG
(TTG)	 AG	76348-76401	GT	AGG
-recovered pasa_asmbl_34091.p1, internal, 74647, 74789
-recovered pasa_asmbl_34091.p1, internal, 75413, 75548
-recovered pasa_asmbl_34091.p1, internal, 76348, 76401
Valid prediction for GeneMark_model.96269_t
Valid prediction for snap_scaffold_25-snap.653-T1
Valid prediction for Augustus_model.g36760.t1
Valid prediction for HiQ_model.g36773.t1
Valid prediction for snap_scaffold_25-snap.659-T1
Valid prediction for pasa_asmbl_34095.p1
Valid prediction for GlimmerHMM_glimmerT_55104-T1
Valid prediction for GeneMark_model.96182_t
Valid prediction for GlimmerHMM_glimmerT_55121-T1
Valid prediction for GeneMark_model.96213_t
Valid prediction for GeneMark_model.96211_t
Valid prediction for GeneMark_model.96261_t
Valid prediction for GeneMark_model.96248_t
Valid prediction for snap_scaffold_25-snap.616-T1
Valid prediction for GlimmerHMM_glimmerT_55118-T1
Valid prediction for Augustus_model.g36762.t1
Valid prediction for CodingQuarry_transcript_38578-T1
Valid prediction for GeneMark_model.96271_t
Valid prediction for GlimmerHMM_glimmerT_55103-T1
Valid prediction for GeneMark_model.96222_t
Valid prediction for GeneMark_model.96256_t
Valid prediction for snap_scaffold_25-snap.634-T1
Valid prediction for snap_scaffold_25-snap.622-T1
Valid prediction for GlimmerHMM_glimmerT_55105-T1
Couldn't classify 100494, 100647
Sorry, prediction pasa_asmbl_34080.p1 fails validation.
(CCC)	 AT	100494-100647	GT	GAG
(GGT)	 AG	103569-103856	GT	AGG
(GCT)	 AG	104365-104496	GT	AGG
(GTG)	 AG	106407-106526	GT	AGG
(AGG)	 AG	106820-107009	GT	AGG
(GCT)	 AG	107542-107789	GT	GGG
(AGA)	 AG	107899-107994	GT	TGG
(AGG)	 AG	108815-109008	GC	AGG
(TCA)	 AG	109172-109315	GT	AGG
(GAG)	 AG	109626-109764	GT	GTG
(TGT)	 AG	110686-110732	GT	AGG
(GAG)	 AG	111107-111200	GT	AGG
(CAG)	 AG	111653-111798	GC	GAG
-recovered pasa_asmbl_34080.p1, terminal, 111653, 111798
-recovered pasa_asmbl_34080.p1, internal, 103569, 103856
-recovered pasa_asmbl_34080.p1, internal, 104365, 104496
-recovered pasa_asmbl_34080.p1, internal, 106407, 106526
-recovered pasa_asmbl_34080.p1, internal, 106820, 107009
-recovered pasa_asmbl_34080.p1, internal, 107542, 107789
-recovered pasa_asmbl_34080.p1, internal, 107899, 107994
-recovered pasa_asmbl_34080.p1, internal, 108815, 109008
-recovered pasa_asmbl_34080.p1, internal, 109172, 109315
-recovered pasa_asmbl_34080.p1, internal, 109626, 109764
-recovered pasa_asmbl_34080.p1, internal, 110686, 110732
-recovered pasa_asmbl_34080.p1, internal, 111107, 111200
-recovered pasa_asmbl_34080.p1, internal, 111653, 111798
Valid prediction for HiQ_model.g36774.t1
Valid prediction for snap_scaffold_25-snap.637-T1
Valid prediction for Augustus_model.g36772.t1
Valid prediction for GlimmerHMM_glimmerT_55132-T1
Valid prediction for snap_scaffold_25-snap.630-T1
Valid prediction for GeneMark_model.96252_t
Valid prediction for GeneMark_model.96283_t
Valid prediction for snap_scaffold_25-snap.647-T1
Valid prediction for GeneMark_model.96217_t
Valid prediction for GeneMark_model.96236_t
Valid prediction for GeneMark_model.96230_t
Valid prediction for GeneMark_model.96192_t
Valid prediction for GeneMark_model.96250_t
Valid prediction for snap_scaffold_25-snap.644-T1
Couldn't classify 98701, 98947
Sorry, prediction pasa_asmbl_34084.p1 fails validation.
(TTA)	 GG	98701-98947	GT	CGG
(ATT)	 AG	100021-100211	AC	AAA
-recovered pasa_asmbl_34084.p1, terminal, 100021, 100211
Valid prediction for Augustus_model.g36771.t1
Valid prediction for GlimmerHMM_glimmerT_55108-T1
Valid prediction for GeneMark_model.96259_t
Valid prediction for GeneMark_model.96282_t
Valid prediction for GlimmerHMM_glimmerT_55120-T1
Couldn't classify 232044, 232175
Couldn't classify 236067, 236127
Sorry, prediction pasa_asmbl_34065.p1 fails validation.
(CTT)	 GT	232044-232175	GT	AGG
(GTG)	 AG	232414-232579	GT	CGG
(ATG)	 AG	233059-233160	GT	AGG
(GGA)	 AG	234871-234993	GT	CAG
(CCC)	 AG	235105-235214	GT	AGG
(GTG)	 AG	235410-235564	GT	ATG
(CCT)	 AG	236067-236127	CT	CCC
add_exon() Sorry, pasa_asmbl_34065.p1 233059-233160-initial-1 is invalid.
-recovered pasa_asmbl_34065.p1, initial, 233059, 233160
-recovered pasa_asmbl_34065.p1, internal, 232414, 232579
-recovered pasa_asmbl_34065.p1, internal, 233059, 233160
-recovered pasa_asmbl_34065.p1, internal, 234871, 234993
-recovered pasa_asmbl_34065.p1, internal, 235105, 235214
-recovered pasa_asmbl_34065.p1, internal, 235410, 235564
Valid prediction for Augustus_model.g36770.t1
Valid prediction for GeneMark_model.96243_t
Valid prediction for snap_scaffold_25-snap.618-T1
Valid prediction for CodingQuarry_transcript_38577-T1
Valid prediction for GeneMark_model.96190_t
Valid prediction for CodingQuarry_transcript_38576-T1
Valid prediction for GeneMark_model.96233_t
Valid prediction for Augustus_model.g36768.t1
Valid prediction for GlimmerHMM_glimmerT_55112-T1
Valid prediction for snap_scaffold_25-snap.649-T1
Valid prediction for GeneMark_model.96263_t
Valid prediction for GeneMark_model.96285_t
Valid prediction for GeneMark_model.96231_t
Valid prediction for snap_scaffold_25-snap.632-T1
Valid prediction for GeneMark_model.96201_t
Valid prediction for GlimmerHMM_glimmerT_55122-T1
Valid prediction for snap_scaffold_25-snap.636-T1
Valid prediction for GeneMark_model.96225_t
Valid prediction for GeneMark_model.96184_t
Valid prediction for Augustus_model.g36764.t1
Valid prediction for GeneMark_model.96275_t
Valid prediction for GeneMark_model.96204_t
Valid prediction for GeneMark_model.96254_t
Valid prediction for GeneMark_model.96273_t
Valid prediction for GlimmerHMM_glimmerT_55129-T1
Valid prediction for snap_scaffold_25-snap.626-T1
Valid prediction for GlimmerHMM_glimmerT_55106-T1
Couldn't classify 79257, 80234
Couldn't classify 93600, 93658
Sorry, prediction pasa_asmbl_34088.p1 fails validation.
(TTC)	 CC	79257-80234	GT	AGG
(AGG)	 AG	81581-81718	GT	AGG
(AAG)	 AG	82355-82474	GT	AGG
(ACT)	 AG	82783-82875	GT	AGG
(GTG)	 AG	83234-83443	GT	AGG
(GAA)	 AG	83582-83740	GT	AGG
(GAC)	 AG	83949-84047	GT	AGG
(CGA)	 AG	84304-84441	GT	CGG
(AGC)	 AG	84640-84819	GT	AGG
(GAC)	 AG	85236-85430	GT	AGG
(GTC)	 AG	85882-86145	GT	AGG
(GAC)	 AG	86750-86867	GT	AGG
(ACC)	 AG	89019-89125	GT	AGG
(ATC)	 AG	89287-89465	GT	AGG
(GAA)	 AG	89579-89885	GT	AGG
(GAG)	 AG	89998-90178	GT	GAG
(CGG)	 AG	90881-90997	GT	TGG
(AGT)	 AG	91111-91552	GT	GGG
(GAA)	 AG	92934-93169	GT	ACG
(GTG)	 AG	93600-93658	GT	TAG
add_exon() Sorry, pasa_asmbl_34088.p1 89998-90178-terminal-3 is invalid.
-recovered pasa_asmbl_34088.p1, terminal, 89998, 90178
-recovered pasa_asmbl_34088.p1, internal, 81581, 81718
-recovered pasa_asmbl_34088.p1, internal, 82355, 82474
-recovered pasa_asmbl_34088.p1, internal, 82783, 82875
-recovered pasa_asmbl_34088.p1, internal, 83234, 83443
-recovered pasa_asmbl_34088.p1, internal, 83582, 83740
-recovered pasa_asmbl_34088.p1, internal, 83949, 84047
-recovered pasa_asmbl_34088.p1, internal, 84304, 84441
-recovered pasa_asmbl_34088.p1, internal, 84640, 84819
-recovered pasa_asmbl_34088.p1, internal, 85236, 85430
-recovered pasa_asmbl_34088.p1, internal, 85882, 86145
-recovered pasa_asmbl_34088.p1, internal, 86750, 86867
-recovered pasa_asmbl_34088.p1, internal, 89019, 89125
-recovered pasa_asmbl_34088.p1, internal, 89287, 89465
-recovered pasa_asmbl_34088.p1, internal, 89579, 89885
-recovered pasa_asmbl_34088.p1, internal, 89998, 90178
-recovered pasa_asmbl_34088.p1, internal, 90881, 90997
-recovered pasa_asmbl_34088.p1, internal, 91111, 91552
-recovered pasa_asmbl_34088.p1, internal, 92934, 93169
-recovered pasa_asmbl_34088.p1, internal, 93600, 93658
Valid prediction for snap_scaffold_25-snap.641-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_25-snap.645-T1
Valid prediction for GeneMark_model.96265_t
Valid prediction for GeneMark_model.96198_t
Valid prediction for GeneMark_model.96188_t
Valid prediction for Augustus_model.g36769.t1
Valid prediction for GeneMark_model.96206_t
Valid prediction for GeneMark_model.96227_t
Valid prediction for GlimmerHMM_glimmerT_55125-T1
Valid prediction for Augustus_model.g36765.t1
Valid prediction for pasa_asmbl_34101.p1
Valid prediction for GeneMark_model.96278_t
Valid prediction for GeneMark_model.96215_t
Valid prediction for snap_scaffold_25-snap.619-T1
Couldn't classify 241417, 242106
Sorry, prediction pasa_asmbl_34062.p1 fails validation.
(TTC)	 CC	241417-242106	CA	AGC
Valid prediction for GlimmerHMM_glimmerT_55131-T1
Valid prediction for snap_scaffold_25-snap.660-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 202620, rend_intergenic: 202617  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38510, rend_intergenic: 22112  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40412, rend_intergenic: 38547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66502, rend_intergenic: 40467  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71436, rend_intergenic: 66644  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95937, rend_intergenic: 72284  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107603, rend_intergenic: 96089  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119185, rend_intergenic: 108634  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119587, rend_intergenic: 119286  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132438, rend_intergenic: 120399  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133602, rend_intergenic: 133328  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134123, rend_intergenic: 133695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138893, rend_intergenic: 134437  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147313, rend_intergenic: 139023  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176110, rend_intergenic: 153389  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184621, rend_intergenic: 176823  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189337, rend_intergenic: 185957  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196285, rend_intergenic: 193311  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197551, rend_intergenic: 196595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199254, rend_intergenic: 197692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 203265, rend_intergenic: 201221  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 203598, rend_intergenic: 203283  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 214903, rend_intergenic: 213180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 220599, rend_intergenic: 216696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 229362, rend_intergenic: 222876  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 261377, rend_intergenic: 256474  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 263697
-exon list size: 1243


building trellis

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30.0    
30.0    
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30.5    
30.6    
30.7    
30.8    
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30.9    
31.0    
31.1    
31.2    
31.2    
31.3    
31.4    
31.5    
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31.6    
31.7    
31.8    
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32.0    
32.0    
32.1    
32.2    
32.3    
32.4    
32.4    
32.5    
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32.8    
32.9    
32.9    
33.0    
33.1    
33.2    
33.3    
33.3    
33.4    
33.5    
33.6    
33.7    
33.7    
33.8    
33.9    
34.0    
34.1    
34.1    
34.2    
34.3    
34.4    
34.5    
34.5    
34.6    
34.7    
34.8    
34.9    
34.9    
35.0    
35.1    
35.2    
35.3    
35.3    
35.4    
35.5    
35.6    
35.7    
35.7    
35.8    
35.9    
36.0    
36.1    
36.1    
36.2    
36.3    
36.4    
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36.5    
36.6    
36.7    
36.8    
36.9    
36.9    
37.0    
37.1    
37.2    
37.3    
37.3    
37.4    
37.5    
37.6    
37.7    
37.8    
37.8    
37.9    
38.0    
38.1    
38.2    
38.2    
38.3    
38.4    
38.5    
38.6    
38.6    
38.7    
38.8    
38.9    
39.0    
39.0    
39.1    
39.2    
39.3    
39.4    
39.4    
39.5    
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39.7    
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39.8    
39.9    
40.0    
40.1    
40.2    
40.2    
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40.4    
40.5    
40.6    
40.6    
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40.8    
40.9    
41.0    
41.0    
41.1    
41.2    
41.3    
41.4    
41.4    
41.5    
41.6    
41.7    
41.8    
41.8    
41.9    
42.0    
42.1    
42.2    
42.2    
42.3    
42.4    
42.5    
42.6    
42.7    
42.7    
42.8    
42.9    
43.0    
43.1    
43.1    
43.2    
43.3    
43.4    
43.5    
43.5    
43.6    
43.7    
43.8    
43.9    
43.9    
44.0    
44.1    
44.2    
44.3    
44.3    
44.4    
44.5    
44.6    
44.7    
44.7    
44.8    
44.9    
45.0    
45.1    
45.1    
45.2    
45.3    
45.4    
45.5    
45.5    
45.6    
45.7    
45.8    
45.9    
45.9    
46.0    
46.1    
46.2    
46.3    
46.3    
46.4    
46.5    
46.6    
46.7    
46.7    
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46.9    
47.0    
47.1    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.6    
47.7    
47.8    
47.9    
48.0    
48.0    
48.1    
48.2    
48.3    
48.4    
48.4    
48.5    
48.6    
48.7    
48.8    
48.8    
48.9    
49.0    
49.1    
49.2    
49.2    
49.3    
49.4    
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49.6    
49.6    
49.7    
49.8    
49.9    
50.0    
50.0    
50.1    
50.2    
50.3    
50.4    
50.4    
50.5    
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50.8    
50.8    
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51.0    
51.1    
51.2    
51.2    
51.3    
51.4    
51.5    
51.6    
51.6    
51.7    
51.8    
51.9    
52.0    
52.0    
52.1    
52.2    
52.3    
52.4    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
52.9    
53.0    
53.1    
53.2    
53.3    
53.3    
53.4    
53.5    
53.6    
53.7    
53.7    
53.8    
53.9    
54.0    
54.1    
54.1    
54.2    
54.3    
54.4    
54.5    
54.5    
54.6    
54.7    
54.8    
54.9    
54.9    
55.0    
55.1    
55.2    
55.3    
55.3    
55.4    
55.5    
55.6    
55.7    
55.7    
55.8    
55.9    
56.0    
56.1    
56.1    
56.2    
56.3    
56.4    
56.5    
56.5    
56.6    
56.7    
56.8    
56.9    
56.9    
57.0    
57.1    
57.2    
57.3    
57.3    
57.4    
57.5    
57.6    
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57.8    
57.9    
58.0    
58.1    
58.2    
58.2    
58.3    
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58.6    
58.7    
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58.9    
59.0    
59.0    
59.1    
59.2    
59.3    
59.4    
59.4    
59.5    
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59.7    
59.8    
59.8    
59.9    
60.0    
60.1    
60.2    
60.2    
60.3    
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60.6    
60.6    
60.7    
60.8    
60.9    
61.0    
61.0    
61.1    
61.2    
61.3    
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61.4    
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61.6    
61.7    
61.8    
61.8    
61.9    
62.0    
62.1    
62.2    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.7    
62.8    
62.9    
63.0    
63.1    
63.1    
63.2    
63.3    
63.4    
63.5    
63.5    
63.6    
63.7    
63.8    
63.9    
63.9    
64.0    
64.1    
64.2    
64.3    
64.3    
64.4    
64.5    
64.6    
64.7    
64.7    
64.8    
64.9    
65.0    
65.1    
65.1    
65.2    
65.3    
65.4    
65.5    
65.5    
65.6    
65.7    
65.8    
65.9    
65.9    
66.0    
66.1    
66.2    
66.3    
66.3    
66.4    
66.5    
66.6    
66.7    
66.7    
66.8    
66.9    
67.0    
67.1    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.6    
67.7    
67.8    
67.9    
68.0    
68.0    
68.1    
68.2    
68.3    
68.4    
68.4    
68.5    
68.6    
68.7    
68.8    
68.8    
68.9    
69.0    
69.1    
69.2    
69.2    
69.3    
69.4    
69.5    
69.6    
69.6    
69.7    
69.8    
69.9    
70.0    
70.0    
70.1    
70.2    
70.3    
70.4    
70.4    
70.5    
70.6    
70.7    
70.8    
70.8    
70.9    
71.0    
71.1    
71.2    
71.2    
71.3    
71.4    
71.5    
71.6    
71.6    
71.7    
71.8    
71.9    
72.0    
72.0    
72.1    
72.2    
72.3    
72.4    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
72.9    
73.0    
73.1    
73.2    
73.3    
73.3    
73.4    
73.5    
73.6    
73.7    
73.7    
73.8    
73.9    
74.0    
74.1    
74.1    
74.2    
74.3    
74.4    
74.5    
74.5    
74.6    
74.7    
74.8    
74.9    
74.9    
75.0    
75.1    
75.2    
75.3    
75.3    
75.4    
75.5    
75.6    
75.7    
75.7    
75.8    
75.9    
76.0    
76.1    
76.1    
76.2    
76.3    
76.4    
76.5    
76.5    
76.6    
76.7    
76.8    
76.9    
76.9    
77.0    
77.1    
77.2    
77.3    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.8    
77.9    
78.0    
78.1    
78.2    
78.2    
78.3    
78.4    
78.5    
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78.6    
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78.9    
79.0    
79.0    
79.1    
79.2    
79.3    
79.4    
79.4    
79.5    
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79.7    
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79.8    
79.9    
80.0    
80.1    
80.2    
80.2    
80.3    
80.4    
80.5    
80.6    
80.6    
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80.8    
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81.0    
81.0    
81.1    
81.2    
81.3    
81.4    
81.4    
81.5    
81.6    
81.7    
81.8    
81.8    
81.9    
82.0    
82.1    
82.2    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.7    
82.8    
82.9    
83.0    
83.1    
83.1    
83.2    
83.3    
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83.5    
83.5    
83.6    
83.7    
83.8    
83.9    
83.9    
84.0    
84.1    
84.2    
84.3    
84.3    
84.4    
84.5    
84.6    
84.7    
84.7    
84.8    
84.9    
85.0    
85.1    
85.1    
85.2    
85.3    
85.4    
85.5    
85.5    
85.6    
85.7    
85.8    
85.9    
85.9    
86.0    
86.1    
86.2    
86.3    
86.3    
86.4    
86.5    
86.6    
86.7    
86.7    
86.8    
86.9    
87.0    
87.1    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.6    
87.7    
87.8    
87.9    
88.0    
88.0    
88.1    
88.2    
88.3    
88.4    
88.4    
88.5    
88.6    
88.7    
88.8    
88.8    
88.9    
89.0    
89.1    
89.2    
89.2    
89.3    
89.4    
89.5    
89.6    
89.6    
89.7    
89.8    
89.9    
90.0    
90.0    
90.1    
90.2    
90.3    
90.4    
90.4    
90.5    
90.6    
90.7    
90.8    
90.8    
90.9    
91.0    
91.1    
91.2    
91.2    
91.3    
91.4    
91.5    
91.6    
91.6    
91.7    
91.8    
91.9    
92.0    
92.0    
92.1    
92.2    
92.3    
92.4    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
92.9    
93.0    
93.1    
93.2    
93.3    
93.3    
93.4    
93.5    
93.6    
93.7    
93.7    
93.8    
93.9    
94.0    
94.1    
94.1    
94.2    
94.3    
94.4    
94.5    
94.5    
94.6    
94.7    
94.8    
94.9    
94.9    
95.0    
95.1    
95.2    
95.3    
95.3    
95.4    
95.5    
95.6    
95.7    
95.7    
95.8    
95.9    
96.0    
96.1    
96.1    
96.2    
96.3    
96.4    
96.5    
96.5    
96.6    
96.7    
96.8    
96.9    
96.9    
97.0    
97.1    
97.2    
97.3    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.8    
97.9    
98.0    
98.1    
98.2    
98.2    
98.3    
98.4    
98.5    
98.6    
98.6    
98.7    
98.8    
98.9    
99.0    
99.0    
99.1    
99.2    
99.3    
99.4    
99.4    
99.5    
99.6    
99.7    
99.8    
99.8    
99.9    
-found 64 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 202620, rend_intergenic: 202617  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38510, rend_intergenic: 22112  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40412, rend_intergenic: 38547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66502, rend_intergenic: 40467  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71436, rend_intergenic: 66644  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95937, rend_intergenic: 72284  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107603, rend_intergenic: 96089  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119185, rend_intergenic: 108634  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119587, rend_intergenic: 119286  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132438, rend_intergenic: 120399  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133602, rend_intergenic: 133328  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134123, rend_intergenic: 133695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138893, rend_intergenic: 134437  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147313, rend_intergenic: 139023  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 176110, rend_intergenic: 153389  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184621, rend_intergenic: 176823  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189337, rend_intergenic: 185957  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196285, rend_intergenic: 193311  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 197551, rend_intergenic: 196595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199254, rend_intergenic: 197692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 203265, rend_intergenic: 201221  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 203598, rend_intergenic: 203283  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 214903, rend_intergenic: 213180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 220599, rend_intergenic: 216696  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 229362, rend_intergenic: 222876  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 261377, rend_intergenic: 256474  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support