-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_25/scaffold_25_2612497-2936189 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_25-snap.567-T1 Valid prediction for snap_scaffold_25-snap.602-T1 Valid prediction for snap_scaffold_25-snap.543-T1 Couldn't classify 24300, 24377 Sorry, prediction pasa_asmbl_33390.p1 fails validation. (ATG) CT 18339-18396 GT AGG (GTG) AG 19046-19339 GT AGG (GAC) AG 19491-19601 GT CGG (GAA) AG 19936-20091 GT GGG (ACT) AG 20936-21067 GT AGG (CCT) AG 21722-21862 GT ATG (CCT) AG 23173-23301 GT AGG (ATC) AG 23730-23875 GT AGG (GCC) AG 24300-24377 CT GCC -recovered pasa_asmbl_33390.p1, initial, 18339, 18396 -recovered pasa_asmbl_33390.p1, internal, 19046, 19339 -recovered pasa_asmbl_33390.p1, internal, 19491, 19601 -recovered pasa_asmbl_33390.p1, internal, 19936, 20091 -recovered pasa_asmbl_33390.p1, internal, 20936, 21067 -recovered pasa_asmbl_33390.p1, internal, 21722, 21862 -recovered pasa_asmbl_33390.p1, internal, 23173, 23301 -recovered pasa_asmbl_33390.p1, internal, 23730, 23875 Valid prediction for Augustus_model.g36748.t1 Valid prediction for GeneMark_model.96072_t Valid prediction for GlimmerHMM_glimmerT_55065-T1 Valid prediction for snap_scaffold_25-snap.613-T1 Valid prediction for snap_scaffold_25-snap.572-T1 Valid prediction for snap_scaffold_25-snap.574-T1 Valid prediction for GeneMark_model.96102_t Valid prediction for CodingQuarry_transcript_38573-T1 Valid prediction for GeneMark_model.96074_t Valid prediction for GeneMark_model.96069_t Valid prediction for GeneMark_model.96075_t Valid prediction for pasa_asmbl_33396.p1 Valid prediction for CodingQuarry_transcript_38570-T1 Valid prediction for GeneMark_model.96113_t Valid prediction for snap_scaffold_25-snap.598-T1 Valid prediction for snap_scaffold_25-snap.593-T1 Valid prediction for snap_scaffold_25-snap.542-T1 Valid prediction for GlimmerHMM_glimmerT_55058-T1 Couldn't classify 24699, 24843 Couldn't classify 34466, 34508 Sorry, prediction pasa_asmbl_33391.p1 fails validation. (ACC) CC 24699-24843 GT AGG (TAT) AG 25566-25703 GT AGG (AAC) AG 26858-27157 GT GGG (GTC) AG 27411-27701 GT CGG (CCC) AG 29520-29713 GT CGG (GGA) AG 30436-30646 GT GGG (AGT) AG 31341-31451 GT AGG (GCT) AG 32959-33149 GT AGG (TTC) AG 33264-33377 GT TGG (GGC) AG 33517-33587 GT GTG (ATG) AG 34466-34508 AA GTA -recovered pasa_asmbl_33391.p1, internal, 25566, 25703 -recovered pasa_asmbl_33391.p1, internal, 26858, 27157 -recovered pasa_asmbl_33391.p1, internal, 27411, 27701 -recovered pasa_asmbl_33391.p1, internal, 29520, 29713 -recovered pasa_asmbl_33391.p1, internal, 30436, 30646 -recovered pasa_asmbl_33391.p1, internal, 31341, 31451 -recovered pasa_asmbl_33391.p1, internal, 32959, 33149 -recovered pasa_asmbl_33391.p1, internal, 33264, 33377 -recovered pasa_asmbl_33391.p1, internal, 33517, 33587 Valid prediction for GlimmerHMM_glimmerT_55071-T1 Valid prediction for snap_scaffold_25-snap.596-T1 Valid prediction for GeneMark_model.96144_t Valid prediction for GlimmerHMM_glimmerT_55087-T1 Valid prediction for GeneMark_model.96086_t Valid prediction for snap_scaffold_25-snap.570-T1 Valid prediction for GlimmerHMM_glimmerT_55085-T1 Valid prediction for CodingQuarry_transcript_38571-T1 Valid prediction for GlimmerHMM_glimmerT_55075-T1 Valid prediction for GeneMark_model.96162_t Valid prediction for Augustus_model.g36755.t1 Valid prediction for GlimmerHMM_glimmerT_55067-T1 Valid prediction for snap_scaffold_25-snap.595-T1 Valid prediction for GeneMark_model.96122_t Valid prediction for GlimmerHMM_glimmerT_55064-T1 Valid prediction for GlimmerHMM_glimmerT_55080-T1 Valid prediction for GlimmerHMM_glimmerT_55074-T1 Valid prediction for GeneMark_model.96171_t Valid prediction for GlimmerHMM_glimmerT_55090-T1 Valid prediction for GeneMark_model.96164_t Valid prediction for GlimmerHMM_glimmerT_55092-T1 Valid prediction for GlimmerHMM_glimmerT_55099-T1 Valid prediction for snap_scaffold_25-snap.553-T1 Couldn't classify 38373, 38403 Couldn't classify 40991, 41138 Sorry, prediction pasa_asmbl_33858.p1 fails validation. (GCT) GC 38373-38403 GT AGG (ATG) AG 38966-39086 GT GGG (GAG) AG 40991-41138 CG CAC add_exon() Sorry, pasa_asmbl_33858.p1 38966-39086-initial-1 is invalid. -recovered pasa_asmbl_33858.p1, initial, 38966, 39086 -recovered pasa_asmbl_33858.p1, internal, 38966, 39086 Valid prediction for GeneMark_model.96088_t Valid prediction for GeneMark_model.96175_t Valid prediction for GeneMark_model.96095_t Couldn't classify 282997, 283125 Sorry, prediction pasa_asmbl_33402.p1 fails validation. (CAG) AT 282997-283125 GT AGG (GAG) AG 283287-283429 GT AGG (GAT) AG 283820-283996 GT GTG (CTG) AG 284531-284605 GT GAG (AGG) AG 284757-284927 GT GTG (GGT) AG 285902-286100 GC GAG -recovered pasa_asmbl_33402.p1, terminal, 284531, 284605 -recovered pasa_asmbl_33402.p1, terminal, 285902, 286100 -recovered pasa_asmbl_33402.p1, internal, 283287, 283429 -recovered pasa_asmbl_33402.p1, internal, 283820, 283996 -recovered pasa_asmbl_33402.p1, internal, 284531, 284605 -recovered pasa_asmbl_33402.p1, internal, 284757, 284927 -recovered pasa_asmbl_33402.p1, internal, 285902, 286100 Valid prediction for snap_scaffold_25-snap.556-T1 Valid prediction for snap_scaffold_25-snap.578-T1 Valid prediction for snap_scaffold_25-snap.615-T1 Valid prediction for GlimmerHMM_glimmerT_55083-T1 Couldn't classify 80277, 80402 Sorry, prediction pasa_asmbl_33875.p1 fails validation. (GCA) CT 80277-80402 GT AGG (GCA) AG 80608-80721 GT AGG (AAG) AG 80857-80913 GT CGG (GCG) AG 81038-81166 GT AGG (GTT) AG 81397-81484 GT AGG (ATA) AG 81638-81648 AC GAA -recovered pasa_asmbl_33875.p1, terminal, 81638, 81648 -recovered pasa_asmbl_33875.p1, internal, 80608, 80721 -recovered pasa_asmbl_33875.p1, internal, 80857, 80913 -recovered pasa_asmbl_33875.p1, internal, 81038, 81166 -recovered pasa_asmbl_33875.p1, internal, 81397, 81484 Valid prediction for snap_scaffold_25-snap.549-T1 Valid prediction for CodingQuarry_transcript_38572-T1 Valid prediction for snap_scaffold_25-snap.566-T1 Valid prediction for GeneMark_model.96177_t Valid prediction for snap_scaffold_25-snap.583-T1 Valid prediction for GeneMark_model.96093_t Valid prediction for GeneMark_model.96135_t Valid prediction for GeneMark_model.96133_t Valid prediction for GeneMark_model.96126_t Valid prediction for GeneMark_model.96081_t Valid prediction for GeneMark_model.96149_t Valid prediction for snap_scaffold_25-snap.607-T1 Valid prediction for GeneMark_model.96160_t Valid prediction for GeneMark_model.96167_t Valid prediction for GeneMark_model.96130_t Valid prediction for GeneMark_model.96157_t Valid prediction for GeneMark_model.96079_t Valid prediction for GeneMark_model.96067_t Valid prediction for snap_scaffold_25-snap.541-T1 Valid prediction for Augustus_model.g36756.t1 Valid prediction for snap_scaffold_25-snap.597-T1 Valid prediction for GeneMark_model.96115_t Valid prediction for GeneMark_model.96147_t Valid prediction for GlimmerHMM_glimmerT_55098-T1 Valid prediction for snap_scaffold_25-snap.544-T1 Valid prediction for GeneMark_model.96091_t Valid prediction for GeneMark_model.96098_t Valid prediction for snap_scaffold_25-snap.611-T1 Valid prediction for snap_scaffold_25-snap.614-T1 Valid prediction for GeneMark_model.96158_t Valid prediction for GeneMark_model.96143_t Valid prediction for snap_scaffold_25-snap.557-T1 Valid prediction for GeneMark_model.96110_t Valid prediction for Augustus_model.g36753.t1 Valid prediction for GlimmerHMM_glimmerT_55082-T1 Valid prediction for snap_scaffold_25-snap.589-T1 Valid prediction for GeneMark_model.96165_t Valid prediction for GlimmerHMM_glimmerT_55070-T1 Valid prediction for snap_scaffold_25-snap.563-T1 Valid prediction for GeneMark_model.96173_t Valid prediction for GlimmerHMM_glimmerT_55062-T1 Valid prediction for GeneMark_model.96154_t Valid prediction for snap_scaffold_25-snap.554-T1 Valid prediction for CodingQuarry_transcript_38569-T1 Valid prediction for GlimmerHMM_glimmerT_55061-T1 Valid prediction for GeneMark_model.96128_t Valid prediction for GeneMark_model.96141_t Valid prediction for snap_scaffold_25-snap.581-T1 Valid prediction for GlimmerHMM_glimmerT_55100-T1 Valid prediction for Augustus_model.g36758.t1 Valid prediction for snap_scaffold_25-snap.569-T1 Valid prediction for GeneMark_model.96124_t Valid prediction for GlimmerHMM_glimmerT_55089-T1 Valid prediction for GeneMark_model.96137_t Valid prediction for GlimmerHMM_glimmerT_55079-T1 Valid prediction for GeneMark_model.96082_t Valid prediction for GeneMark_model.96146_t Valid prediction for GeneMark_model.96104_t Valid prediction for GeneMark_model.96084_t Valid prediction for GlimmerHMM_glimmerT_55076-T1 Valid prediction for GeneMark_model.96119_t Valid prediction for GeneMark_model.96108_t Valid prediction for snap_scaffold_25-snap.547-T1 Sorry, intron length (3) is less than minimum required (10) Sorry, intron length (5) is less than minimum required (10) Sorry, intron length (9) is less than minimum required (10) Valid prediction for HiQ_model.g36750.t1 Valid prediction for snap_scaffold_25-snap.552-T1 Valid prediction for GeneMark_model.96169_t Valid prediction for GeneMark_model.96076_t Valid prediction for Augustus_model.g36757.t1 Valid prediction for snap_scaffold_25-snap.600-T1 Valid prediction for snap_scaffold_25-snap.564-T1 Valid prediction for GeneMark_model.96152_t Valid prediction for Augustus_model.g36754.t1 Valid prediction for snap_scaffold_25-snap.608-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for snap_scaffold_25-snap.545-T1 Valid prediction for GlimmerHMM_glimmerT_55096-T1 Valid prediction for GeneMark_model.96092_t Valid prediction for Augustus_model.g36752.t1 Valid prediction for Augustus_model.g36759.t1 Valid prediction for GlimmerHMM_glimmerT_55073-T1 Valid prediction for GlimmerHMM_glimmerT_55072-T1 Couldn't classify 78677, 78774 Sorry, prediction pasa_asmbl_33400.p1 fails validation. (ATG) GG 74912-75031 GT AGG (GCG) AG 75398-75500 GT CGG (AGG) AG 75608-75723 GT CGG (GTT) AG 76323-76388 GT CCG (GGA) AG 76825-76938 GT AGG (GAT) AG 77836-77953 GT AGG (GTC) AG 78677-78774 GG AAG -recovered pasa_asmbl_33400.p1, initial, 74912, 75031 -recovered pasa_asmbl_33400.p1, internal, 75398, 75500 -recovered pasa_asmbl_33400.p1, internal, 75608, 75723 -recovered pasa_asmbl_33400.p1, internal, 76323, 76388 -recovered pasa_asmbl_33400.p1, internal, 76825, 76938 -recovered pasa_asmbl_33400.p1, internal, 77836, 77953 Valid prediction for HiQ_model.g36746.t1 Valid prediction for snap_scaffold_25-snap.612-T1 Valid prediction for snap_scaffold_25-snap.575-T1 Valid prediction for snap_scaffold_25-snap.559-T1 Valid prediction for GeneMark_model.96100_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_25-snap.588-T1 Valid prediction for snap_scaffold_25-snap.568-T1 Valid prediction for GeneMark_model.96129_t Valid prediction for snap_scaffold_25-snap.540-T1 Valid prediction for Augustus_model.g36749.t1 Valid prediction for GeneMark_model.96107_t Valid prediction for GeneMark_model.96118_t Valid prediction for snap_scaffold_25-snap.591-T1 Valid prediction for GeneMark_model.96066_t Valid prediction for snap_scaffold_25-snap.573-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for GeneMark_model.96139_t Valid prediction for GlimmerHMM_glimmerT_55063-T1 Valid prediction for GeneMark_model.96161_t Valid prediction for snap_scaffold_25-snap.585-T1 Valid prediction for GeneMark_model.96114_t Valid prediction for snap_scaffold_25-snap.599-T1 Valid prediction for GlimmerHMM_glimmerT_55081-T1 Valid prediction for GeneMark_model.96172_t Valid prediction for Augustus_model.g36747.t1 Valid prediction for GeneMark_model.96106_t Valid prediction for GeneMark_model.96065_t Valid prediction for GeneMark_model.96083_t Valid prediction for GeneMark_model.96077_t Valid prediction for GlimmerHMM_glimmerT_55086-T1 Valid prediction for GeneMark_model.96094_t Valid prediction for snap_scaffold_25-snap.592-T1 Valid prediction for GeneMark_model.96085_t Valid prediction for snap_scaffold_25-snap.590-T1 Valid prediction for snap_scaffold_25-snap.604-T1 Valid prediction for GeneMark_model.96131_t Valid prediction for GlimmerHMM_glimmerT_55077-T1 Valid prediction for GlimmerHMM_glimmerT_55068-T1 Valid prediction for GeneMark_model.96123_t Valid prediction for GeneMark_model.96096_t Valid prediction for snap_scaffold_25-snap.580-T1 Valid prediction for GeneMark_model.96109_t Valid prediction for GlimmerHMM_glimmerT_55078-T1 Valid prediction for GeneMark_model.96073_t Valid prediction for snap_scaffold_25-snap.550-T1 Valid prediction for GeneMark_model.96071_t Valid prediction for GeneMark_model.96099_t Valid prediction for GlimmerHMM_glimmerT_55088-T1 Valid prediction for GlimmerHMM_glimmerT_55095-T1 Valid prediction for snap_scaffold_25-snap.561-T1 Valid prediction for GeneMark_model.96151_t Valid prediction for GlimmerHMM_glimmerT_55097-T1 Valid prediction for GeneMark_model.96111_t Valid prediction for GeneMark_model.96176_t Valid prediction for GeneMark_model.96117_t Valid prediction for GeneMark_model.96155_t Valid prediction for GeneMark_model.96163_t Valid prediction for Augustus_model.g36751.t1 Valid prediction for snap_scaffold_25-snap.579-T1 Valid prediction for GeneMark_model.96121_t Valid prediction for GeneMark_model.96150_t Valid prediction for snap_scaffold_25-snap.582-T1 Valid prediction for GeneMark_model.96070_t Valid prediction for GeneMark_model.96125_t Valid prediction for snap_scaffold_25-snap.571-T1 Valid prediction for GeneMark_model.96078_t Valid prediction for GeneMark_model.96120_t Valid prediction for GeneMark_model.96148_t Valid prediction for GeneMark_model.96168_t Valid prediction for GeneMark_model.96134_t Valid prediction for GeneMark_model.96080_t Valid prediction for GeneMark_model.96105_t Valid prediction for GeneMark_model.96132_t Valid prediction for snap_scaffold_25-snap.546-T1 Valid prediction for GeneMark_model.96116_t Valid prediction for GeneMark_model.96166_t Valid prediction for snap_scaffold_25-snap.565-T1 Valid prediction for GeneMark_model.96159_t Valid prediction for GlimmerHMM_glimmerT_55091-T1 Valid prediction for snap_scaffold_25-snap.610-T1 Valid prediction for snap_scaffold_25-snap.558-T1 Valid prediction for GeneMark_model.96087_t Valid prediction for GlimmerHMM_glimmerT_55084-T1 Valid prediction for GeneMark_model.96112_t Valid prediction for GlimmerHMM_glimmerT_55094-T1 Valid prediction for GlimmerHMM_glimmerT_55093-T1 Valid prediction for GeneMark_model.96145_t Valid prediction for snap_scaffold_25-snap.577-T1 Valid prediction for snap_scaffold_25-snap.576-T1 Valid prediction for snap_scaffold_25-snap.605-T1 Valid prediction for GeneMark_model.96142_t Valid prediction for snap_scaffold_25-snap.594-T1 Valid prediction for snap_scaffold_25-snap.587-T1 Valid prediction for snap_scaffold_25-snap.609-T1 Valid prediction for snap_scaffold_25-snap.606-T1 Valid prediction for GeneMark_model.96136_t Valid prediction for GlimmerHMM_glimmerT_55060-T1 Valid prediction for GlimmerHMM_glimmerT_55057-T1 Valid prediction for GeneMark_model.96138_t Valid prediction for GeneMark_model.96153_t Valid prediction for GeneMark_model.96101_t Valid prediction for Augustus_model.g36745.t1 Valid prediction for snap_scaffold_25-snap.586-T1 Valid prediction for GeneMark_model.96156_t Valid prediction for GlimmerHMM_glimmerT_55069-T1 Valid prediction for GeneMark_model.96103_t Valid prediction for snap_scaffold_25-snap.555-T1 Valid prediction for snap_scaffold_25-snap.560-T1 Valid prediction for snap_scaffold_25-snap.584-T1 Valid prediction for snap_scaffold_25-snap.548-T1 Valid prediction for GeneMark_model.96127_t Valid prediction for GlimmerHMM_glimmerT_55059-T1 Valid prediction for GeneMark_model.96090_t Valid prediction for GlimmerHMM_glimmerT_55101-T1 Valid prediction for snap_scaffold_25-snap.601-T1 Valid prediction for GeneMark_model.96140_t Valid prediction for GeneMark_model.96097_t Valid prediction for GeneMark_model.96170_t Valid prediction for GeneMark_model.96064_t Valid prediction for GlimmerHMM_glimmerT_55066-T1 Valid prediction for snap_scaffold_25-snap.551-T1 Valid prediction for snap_scaffold_25-snap.562-T1 Valid prediction for snap_scaffold_25-snap.603-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16902, rend_intergenic: 4317 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 22395, rend_intergenic: 19946 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27146, rend_intergenic: 23097 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27815, rend_intergenic: 27328 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 33545, rend_intergenic: 27916 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 41903, rend_intergenic: 37149 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 57336, rend_intergenic: 52073 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 71904, rend_intergenic: 68809 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 78783, rend_intergenic: 76572 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 86434, rend_intergenic: 79859 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 90166, rend_intergenic: 86868 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 98395, rend_intergenic: 90317 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 102552, rend_intergenic: 98749 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103756, rend_intergenic: 102734 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 107429, rend_intergenic: 104594 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 112609, rend_intergenic: 107442 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 118856, rend_intergenic: 114190 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 126171, rend_intergenic: 119010 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 130875, rend_intergenic: 126220 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 133384, rend_intergenic: 131308 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 140852, rend_intergenic: 133440 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 142506, rend_intergenic: 141728 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 192049, rend_intergenic: 142656 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 216624, rend_intergenic: 194016 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 231531, rend_intergenic: 220302 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 242710, rend_intergenic: 241038 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 247295, rend_intergenic: 242717 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 267494, rend_intergenic: 249183 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 287789, rend_intergenic: 271555 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 319483, rend_intergenic: 292656 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 323693 -exon list size: 1542 building trellis 0.1 0.1 0.2 0.3 0.3 0.4 0.5 0.5 0.6 0.6 0.7 0.8 0.8 0.9 1.0 1.0 1.1 1.2 1.2 1.3 1.4 1.4 1.5 1.6 1.6 1.7 1.7 1.8 1.9 1.9 2.0 2.1 2.1 2.2 2.3 2.3 2.4 2.5 2.5 2.6 2.7 2.7 2.8 2.8 2.9 3.0 3.0 3.1 3.2 3.2 3.3 3.4 3.4 3.5 3.6 3.6 3.7 3.8 3.8 3.9 4.0 4.0 4.1 4.1 4.2 4.3 4.3 4.4 4.5 4.5 4.6 4.7 4.7 4.8 4.9 4.9 5.0 5.1 5.1 5.2 5.2 5.3 5.4 5.4 5.5 5.6 5.6 5.7 5.8 5.8 5.9 6.0 6.0 6.1 6.2 6.2 6.3 6.3 6.4 6.5 6.5 6.6 6.7 6.7 6.8 6.9 6.9 7.0 7.1 7.1 7.2 7.3 7.3 7.4 7.4 7.5 7.6 7.6 7.7 7.8 7.8 7.9 8.0 8.0 8.1 8.2 8.2 8.3 8.4 8.4 8.5 8.5 8.6 8.7 8.7 8.8 8.9 8.9 9.0 9.1 9.1 9.2 9.3 9.3 9.4 9.5 9.5 9.6 9.7 9.7 9.8 9.8 9.9 10.0 10.0 10.1 10.2 10.2 10.3 10.4 10.4 10.5 10.6 10.6 10.7 10.8 10.8 10.9 10.9 11.0 11.1 11.1 11.2 11.3 11.3 11.4 11.5 11.5 11.6 11.7 11.7 11.8 11.9 11.9 12.0 12.0 12.1 12.2 12.2 12.3 12.4 12.4 12.5 12.6 12.6 12.7 12.8 12.8 12.9 13.0 13.0 13.1 13.1 13.2 13.3 13.3 13.4 13.5 13.5 13.6 13.7 13.7 13.8 13.9 13.9 14.0 14.1 14.1 14.2 14.2 14.3 14.4 14.4 14.5 14.6 14.6 14.7 14.8 14.8 14.9 15.0 15.0 15.1 15.2 15.2 15.3 15.3 15.4 15.5 15.5 15.6 15.7 15.7 15.8 15.9 15.9 16.0 16.1 16.1 16.2 16.3 16.3 16.4 16.5 16.5 16.6 16.6 16.7 16.8 16.8 16.9 17.0 17.0 17.1 17.2 17.2 17.3 17.4 17.4 17.5 17.6 17.6 17.7 17.7 17.8 17.9 17.9 18.0 18.1 18.1 18.2 18.3 18.3 18.4 18.5 18.5 18.6 18.7 18.7 18.8 18.8 18.9 19.0 19.0 19.1 19.2 19.2 19.3 19.4 19.4 19.5 19.6 19.6 19.7 19.8 19.8 19.9 19.9 20.0 20.1 20.1 20.2 20.3 20.3 20.4 20.5 20.5 20.6 20.7 20.7 20.8 20.9 20.9 21.0 21.0 21.1 21.2 21.2 21.3 21.4 21.4 21.5 21.6 21.6 21.7 21.8 21.8 21.9 22.0 22.0 22.1 22.2 22.2 22.3 22.3 22.4 22.5 22.5 22.6 22.7 22.7 22.8 22.9 22.9 23.0 23.1 23.1 23.2 23.3 23.3 23.4 23.4 23.5 23.6 23.6 23.7 23.8 23.8 23.9 24.0 24.0 24.1 24.2 24.2 24.3 24.4 24.4 24.5 24.5 24.6 24.7 24.7 24.8 24.9 24.9 25.0 25.1 25.1 25.2 25.3 25.3 25.4 25.5 25.5 25.6 25.6 25.7 25.8 25.8 25.9 26.0 26.0 26.1 26.2 26.2 26.3 26.4 26.4 26.5 26.6 26.6 26.7 26.7 26.8 26.9 26.9 27.0 27.1 27.1 27.2 27.3 27.3 27.4 27.5 27.5 27.6 27.7 27.7 27.8 27.8 27.9 28.0 28.0 28.1 28.2 28.2 28.3 28.4 28.4 28.5 28.6 28.6 28.7 28.8 28.8 28.9 29.0 29.0 29.1 29.1 29.2 29.3 29.3 29.4 29.5 29.5 29.6 29.7 29.7 29.8 29.9 29.9 30.0 30.1 30.1 30.2 30.2 30.3 30.4 30.4 30.5 30.6 30.6 30.7 30.8 30.8 30.9 31.0 31.0 31.1 31.2 31.2 31.3 31.3 31.4 31.5 31.5 31.6 31.7 31.7 31.8 31.9 31.9 32.0 32.1 32.1 32.2 32.3 32.3 32.4 32.4 32.5 32.6 32.6 32.7 32.8 32.8 32.9 33.0 33.0 33.1 33.2 33.2 33.3 33.4 33.4 33.5 33.5 33.6 33.7 33.7 33.8 33.9 33.9 34.0 34.1 34.1 34.2 34.3 34.3 34.4 34.5 34.5 34.6 34.7 34.7 34.8 34.8 34.9 35.0 35.0 35.1 35.2 35.2 35.3 35.4 35.4 35.5 35.6 35.6 35.7 35.8 35.8 35.9 35.9 36.0 36.1 36.1 36.2 36.3 36.3 36.4 36.5 36.5 36.6 36.7 36.7 36.8 36.9 36.9 37.0 37.0 37.1 37.2 37.2 37.3 37.4 37.4 37.5 37.6 37.6 37.7 37.8 37.8 37.9 38.0 38.0 38.1 38.1 38.2 38.3 38.3 38.4 38.5 38.5 38.6 38.7 38.7 38.8 38.9 38.9 39.0 39.1 39.1 39.2 39.2 39.3 39.4 39.4 39.5 39.6 39.6 39.7 39.8 39.8 39.9 40.0 40.0 40.1 40.2 40.2 40.3 40.3 40.4 40.5 40.5 40.6 40.7 40.7 40.8 40.9 40.9 41.0 41.1 41.1 41.2 41.3 41.3 41.4 41.5 41.5 41.6 41.6 41.7 41.8 41.8 41.9 42.0 42.0 42.1 42.2 42.2 42.3 42.4 42.4 42.5 42.6 42.6 42.7 42.7 42.8 42.9 42.9 43.0 43.1 43.1 43.2 43.3 43.3 43.4 43.5 43.5 43.6 43.7 43.7 43.8 43.8 43.9 44.0 44.0 44.1 44.2 44.2 44.3 44.4 44.4 44.5 44.6 44.6 44.7 44.8 44.8 44.9 44.9 45.0 45.1 45.1 45.2 45.3 45.3 45.4 45.5 45.5 45.6 45.7 45.7 45.8 45.9 45.9 46.0 46.0 46.1 46.2 46.2 46.3 46.4 46.4 46.5 46.6 46.6 46.7 46.8 46.8 46.9 47.0 47.0 47.1 47.2 47.2 47.3 47.3 47.4 47.5 47.5 47.6 47.7 47.7 47.8 47.9 47.9 48.0 48.1 48.1 48.2 48.3 48.3 48.4 48.4 48.5 48.6 48.6 48.7 48.8 48.8 48.9 49.0 49.0 49.1 49.2 49.2 49.3 49.4 49.4 49.5 49.5 49.6 49.7 49.7 49.8 49.9 49.9 50.0 50.1 50.1 50.2 50.3 50.3 50.4 50.5 50.5 50.6 50.6 50.7 50.8 50.8 50.9 51.0 51.0 51.1 51.2 51.2 51.3 51.4 51.4 51.5 51.6 51.6 51.7 51.7 51.8 51.9 51.9 52.0 52.1 52.1 52.2 52.3 52.3 52.4 52.5 52.5 52.6 52.7 52.7 52.8 52.8 52.9 53.0 53.0 53.1 53.2 53.2 53.3 53.4 53.4 53.5 53.6 53.6 53.7 53.8 53.8 53.9 54.0 54.0 54.1 54.1 54.2 54.3 54.3 54.4 54.5 54.5 54.6 54.7 54.7 54.8 54.9 54.9 55.0 55.1 55.1 55.2 55.2 55.3 55.4 55.4 55.5 55.6 55.6 55.7 55.8 55.8 55.9 56.0 56.0 56.1 56.2 56.2 56.3 56.3 56.4 56.5 56.5 56.6 56.7 56.7 56.8 56.9 56.9 57.0 57.1 57.1 57.2 57.3 57.3 57.4 57.4 57.5 57.6 57.6 57.7 57.8 57.8 57.9 58.0 58.0 58.1 58.2 58.2 58.3 58.4 58.4 58.5 58.5 58.6 58.7 58.7 58.8 58.9 58.9 59.0 59.1 59.1 59.2 59.3 59.3 59.4 59.5 59.5 59.6 59.7 59.7 59.8 59.8 59.9 60.0 60.0 60.1 60.2 60.2 60.3 60.4 60.4 60.5 60.6 60.6 60.7 60.8 60.8 60.9 60.9 61.0 61.1 61.1 61.2 61.3 61.3 61.4 61.5 61.5 61.6 61.7 61.7 61.8 61.9 61.9 62.0 62.0 62.1 62.2 62.2 62.3 62.4 62.4 62.5 62.6 62.6 62.7 62.8 62.8 62.9 63.0 63.0 63.1 63.1 63.2 63.3 63.3 63.4 63.5 63.5 63.6 63.7 63.7 63.8 63.9 63.9 64.0 64.1 64.1 64.2 64.2 64.3 64.4 64.4 64.5 64.6 64.6 64.7 64.8 64.8 64.9 65.0 65.0 65.1 65.2 65.2 65.3 65.3 65.4 65.5 65.5 65.6 65.7 65.7 65.8 65.9 65.9 66.0 66.1 66.1 66.2 66.3 66.3 66.4 66.5 66.5 66.6 66.6 66.7 66.8 66.8 66.9 67.0 67.0 67.1 67.2 67.2 67.3 67.4 67.4 67.5 67.6 67.6 67.7 67.7 67.8 67.9 67.9 68.0 68.1 68.1 68.2 68.3 68.3 68.4 68.5 68.5 68.6 68.7 68.7 68.8 68.8 68.9 69.0 69.0 69.1 69.2 69.2 69.3 69.4 69.4 69.5 69.6 69.6 69.7 69.8 69.8 69.9 69.9 70.0 70.1 70.1 70.2 70.3 70.3 70.4 70.5 70.5 70.6 70.7 70.7 70.8 70.9 70.9 71.0 71.0 71.1 71.2 71.2 71.3 71.4 71.4 71.5 71.6 71.6 71.7 71.8 71.8 71.9 72.0 72.0 72.1 72.2 72.2 72.3 72.3 72.4 72.5 72.5 72.6 72.7 72.7 72.8 72.9 72.9 73.0 73.1 73.1 73.2 73.3 73.3 73.4 73.4 73.5 73.6 73.6 73.7 73.8 73.8 73.9 74.0 74.0 74.1 74.2 74.2 74.3 74.4 74.4 74.5 74.5 74.6 74.7 74.7 74.8 74.9 74.9 75.0 75.1 75.1 75.2 75.3 75.3 75.4 75.5 75.5 75.6 75.6 75.7 75.8 75.8 75.9 76.0 76.0 76.1 76.2 76.2 76.3 76.4 76.4 76.5 76.6 76.6 76.7 76.7 76.8 76.9 76.9 77.0 77.1 77.1 77.2 77.3 77.3 77.4 77.5 77.5 77.6 77.7 77.7 77.8 77.8 77.9 78.0 78.0 78.1 78.2 78.2 78.3 78.4 78.4 78.5 78.6 78.6 78.7 78.8 78.8 78.9 79.0 79.0 79.1 79.1 79.2 79.3 79.3 79.4 79.5 79.5 79.6 79.7 79.7 79.8 79.9 79.9 80.0 80.1 80.1 80.2 80.2 80.3 80.4 80.4 80.5 80.6 80.6 80.7 80.8 80.8 80.9 81.0 81.0 81.1 81.2 81.2 81.3 81.3 81.4 81.5 81.5 81.6 81.7 81.7 81.8 81.9 81.9 82.0 82.1 82.1 82.2 82.3 82.3 82.4 82.4 82.5 82.6 82.6 82.7 82.8 82.8 82.9 83.0 83.0 83.1 83.2 83.2 83.3 83.4 83.4 83.5 83.5 83.6 83.7 83.7 83.8 83.9 83.9 84.0 84.1 84.1 84.2 84.3 84.3 84.4 84.5 84.5 84.6 84.7 84.7 84.8 84.8 84.9 85.0 85.0 85.1 85.2 85.2 85.3 85.4 85.4 85.5 85.6 85.6 85.7 85.8 85.8 85.9 85.9 86.0 86.1 86.1 86.2 86.3 86.3 86.4 86.5 86.5 86.6 86.7 86.7 86.8 86.9 86.9 87.0 87.0 87.1 87.2 87.2 87.3 87.4 87.4 87.5 87.6 87.6 87.7 87.8 87.8 87.9 88.0 88.0 88.1 88.1 88.2 88.3 88.3 88.4 88.5 88.5 88.6 88.7 88.7 88.8 88.9 88.9 89.0 89.1 89.1 89.2 89.2 89.3 89.4 89.4 89.5 89.6 89.6 89.7 89.8 89.8 89.9 90.0 90.0 90.1 90.2 90.2 90.3 90.3 90.4 90.5 90.5 90.6 90.7 90.7 90.8 90.9 90.9 91.0 91.1 91.1 91.2 91.3 91.3 91.4 91.5 91.5 91.6 91.6 91.7 91.8 91.8 91.9 92.0 92.0 92.1 92.2 92.2 92.3 92.4 92.4 92.5 92.6 92.6 92.7 92.7 92.8 92.9 92.9 93.0 93.1 93.1 93.2 93.3 93.3 93.4 93.5 93.5 93.6 93.7 93.7 93.8 93.8 93.9 94.0 94.0 94.1 94.2 94.2 94.3 94.4 94.4 94.5 94.6 94.6 94.7 94.8 94.8 94.9 94.9 95.0 95.1 95.1 95.2 95.3 95.3 95.4 95.5 95.5 95.6 95.7 95.7 95.8 95.9 95.9 96.0 96.0 96.1 96.2 96.2 96.3 96.4 96.4 96.5 96.6 96.6 96.7 96.8 96.8 96.9 97.0 97.0 97.1 97.2 97.2 97.3 97.3 97.4 97.5 97.5 97.6 97.7 97.7 97.8 97.9 97.9 98.0 98.1 98.1 98.2 98.3 98.3 98.4 98.4 98.5 98.6 98.6 98.7 98.8 98.8 98.9 99.0 99.0 99.1 99.2 99.2 99.3 99.4 99.4 99.5 99.5 99.6 99.7 99.7 99.8 99.9 99.9 -found 94 predictions from path traversal Error with prediction: snap lend_intergenic: 16902, rend_intergenic: 4317 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 22395, rend_intergenic: 19946 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27146, rend_intergenic: 23097 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 27815, rend_intergenic: 27328 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 33545, rend_intergenic: 27916 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 41903, rend_intergenic: 37149 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 57336, rend_intergenic: 52073 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 71904, rend_intergenic: 68809 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 78783, rend_intergenic: 76572 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 86434, rend_intergenic: 79859 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 90166, rend_intergenic: 86868 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 98395, rend_intergenic: 90317 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 102552, rend_intergenic: 98749 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103756, rend_intergenic: 102734 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 107429, rend_intergenic: 104594 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 112609, rend_intergenic: 107442 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 118856, rend_intergenic: 114190 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 126171, rend_intergenic: 119010 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 130875, rend_intergenic: 126220 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 133384, rend_intergenic: 131308 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 140852, rend_intergenic: 133440 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 142506, rend_intergenic: 141728 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 192049, rend_intergenic: 142656 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 216624, rend_intergenic: 194016 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 231531, rend_intergenic: 220302 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 242710, rend_intergenic: 241038 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 247295, rend_intergenic: 242717 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 267494, rend_intergenic: 249183 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 287789, rend_intergenic: 271555 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 319483, rend_intergenic: 292656 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 28 predictions persist after filtering for low support