-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_25/scaffold_25_2086909-2414631 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_25-snap.449-T1 Valid prediction for snap_scaffold_25-snap.471-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GeneMark_model.95971_t Valid prediction for GeneMark_model.95955_t Valid prediction for GeneMark_model.95985_t Valid prediction for GeneMark_model.95909_t Valid prediction for GeneMark_model.95915_t Valid prediction for GeneMark_model.95982_t Valid prediction for GlimmerHMM_glimmerT_55012-T1 Valid prediction for Augustus_model.g36711.t1 Valid prediction for GlimmerHMM_glimmerT_54993-T1 Valid prediction for snap_scaffold_25-snap.452-T1 Couldn't classify 36097, 36138 Couldn't classify 38955, 39044 Sorry, prediction pasa_asmbl_33382.p1 fails validation. (CAG) AG 36097-36138 GT CGG (TGG) AG 37487-37588 GT ACG (GTT) AG 37743-37829 GT AGG (GAC) AG 38955-39044 AA AGA -recovered pasa_asmbl_33382.p1, internal, 36097, 36138 -recovered pasa_asmbl_33382.p1, internal, 37487, 37588 -recovered pasa_asmbl_33382.p1, internal, 37743, 37829 Valid prediction for GeneMark_model.95895_t Valid prediction for GlimmerHMM_glimmerT_54999-T1 Valid prediction for snap_scaffold_25-snap.473-T1 Couldn't classify 162024, 162289 Couldn't classify 164993, 165049 Sorry, prediction pasa_asmbl_33388.p1 fails validation. (TAT) GG 162024-162289 GT GGG (GGT) AG 164059-164143 GT TGG (AGG) AG 164993-165049 TC AGT -recovered pasa_asmbl_33388.p1, internal, 164059, 164143 Valid prediction for GlimmerHMM_glimmerT_55020-T1 Valid prediction for GlimmerHMM_glimmerT_55019-T1 Valid prediction for GeneMark_model.95978_t Valid prediction for GlimmerHMM_glimmerT_54998-T1 Valid prediction for GlimmerHMM_glimmerT_55002-T1 Valid prediction for snap_scaffold_25-snap.455-T1 Valid prediction for GeneMark_model.95932_t Valid prediction for GeneMark_model.95948_t Valid prediction for snap_scaffold_25-snap.467-T1 Valid prediction for Augustus_model.g36716.t1 Valid prediction for GeneMark_model.95952_t Couldn't classify 40055, 40171 Couldn't classify 45937, 46026 Sorry, prediction pasa_asmbl_33383.p1 fails validation. (GTG) CC 40055-40171 GT AGG (ACC) AG 42975-43064 GT AGG (TTG) AG 44059-44154 GT TGG (GTG) AG 44241-44381 GT AGG (GAC) AG 44476-44589 GT AGG (GTG) AG 45937-46026 GT ATG -recovered pasa_asmbl_33383.p1, internal, 42975, 43064 -recovered pasa_asmbl_33383.p1, internal, 44059, 44154 -recovered pasa_asmbl_33383.p1, internal, 44241, 44381 -recovered pasa_asmbl_33383.p1, internal, 44476, 44589 -recovered pasa_asmbl_33383.p1, internal, 45937, 46026 Valid prediction for GeneMark_model.95937_t Valid prediction for GeneMark_model.95959_t Valid prediction for GlimmerHMM_glimmerT_55016-T1 Valid prediction for Augustus_model.g36724.t1 Valid prediction for snap_scaffold_25-snap.464-T1 Valid prediction for snap_scaffold_25-snap.486-T1 Couldn't classify 21501, 21512 Couldn't classify 23803, 23954 Sorry, prediction pasa_asmbl_33381.p1 fails validation. (GAC) CG 21501-21512 GT AGG (AAC) AG 21637-21799 GT AGG (AGA) AG 22955-23097 GT AGG (GAA) AG 23614-23707 GT AGG (CCC) AG 23803-23954 AC ACA -recovered pasa_asmbl_33381.p1, internal, 21637, 21799 -recovered pasa_asmbl_33381.p1, internal, 22955, 23097 -recovered pasa_asmbl_33381.p1, internal, 23614, 23707 Couldn't classify 54997, 55149 Couldn't classify 58648, 58791 Sorry, prediction pasa_asmbl_33385.p1 fails validation. (TTC) AG 54997-55149 GT ACG (AAC) AG 56013-56171 GT AGG (GTA) AG 56863-56963 GT AGG (GAT) AG 57725-57917 GT AGG (GAC) AG 58648-58791 GT TGG -recovered pasa_asmbl_33385.p1, internal, 54997, 55149 -recovered pasa_asmbl_33385.p1, internal, 56013, 56171 -recovered pasa_asmbl_33385.p1, internal, 56863, 56963 -recovered pasa_asmbl_33385.p1, internal, 57725, 57917 -recovered pasa_asmbl_33385.p1, internal, 58648, 58791 Couldn't classify 168485, 168784 Sorry, prediction pasa_asmbl_33389.p1 fails validation. (ACC) TC 168485-168784 AT GAA Valid prediction for snap_scaffold_25-snap.483-T1 Valid prediction for GlimmerHMM_glimmerT_54995-T1 Valid prediction for GlimmerHMM_glimmerT_55005-T1 Valid prediction for GeneMark_model.95934_t Valid prediction for GeneMark_model.95886_t Valid prediction for snap_scaffold_25-snap.427-T1 Valid prediction for GeneMark_model.95888_t Valid prediction for snap_scaffold_25-snap.450-T1 Valid prediction for GeneMark_model.95926_t Valid prediction for GlimmerHMM_glimmerT_55008-T1 Valid prediction for snap_scaffold_25-snap.474-T1 Valid prediction for snap_scaffold_25-snap.458-T1 Valid prediction for snap_scaffold_25-snap.478-T1 Valid prediction for GlimmerHMM_glimmerT_55006-T1 Valid prediction for snap_scaffold_25-snap.476-T1 Couldn't classify 126034, 126096 Sorry, prediction GeneMark_model.95924_t fails validation. (GAA) AG 126034-126096 GT AGG (AGC) AG 126389-126424 GT GAG (GGG) AG 126478-126535 GC GAG -recovered GeneMark_model.95924_t, terminal, 126478, 126535 -recovered GeneMark_model.95924_t, internal, 126034, 126096 -recovered GeneMark_model.95924_t, internal, 126389, 126424 -recovered GeneMark_model.95924_t, internal, 126478, 126535 Valid prediction for GeneMark_model.95917_t Valid prediction for GeneMark_model.95903_t Valid prediction for CodingQuarry_transcript_38567-T1 Valid prediction for GeneMark_model.95953_t Valid prediction for Augustus_model.g36730.t1 Valid prediction for GlimmerHMM_glimmerT_54992-T1 Valid prediction for snap_scaffold_25-snap.443-T1 Valid prediction for snap_scaffold_25-snap.428-T1 Valid prediction for Augustus_model.g36731.t1 Valid prediction for GeneMark_model.95950_t Valid prediction for GeneMark_model.95920_t Valid prediction for GeneMark_model.95902_t Valid prediction for GeneMark_model.95930_t Valid prediction for GeneMark_model.95913_t Valid prediction for GeneMark_model.95969_t Valid prediction for GeneMark_model.95988_t Valid prediction for snap_scaffold_25-snap.431-T1 Valid prediction for GeneMark_model.95976_t Valid prediction for GeneMark_model.95940_t Valid prediction for snap_scaffold_25-snap.480-T1 Valid prediction for Augustus_model.g36729.t1 Valid prediction for GeneMark_model.95967_t Valid prediction for GeneMark_model.95890_t Valid prediction for GeneMark_model.95942_t Valid prediction for GeneMark_model.95961_t Valid prediction for GeneMark_model.95957_t Valid prediction for GlimmerHMM_glimmerT_55011-T1 Valid prediction for GeneMark_model.95946_t Valid prediction for GeneMark_model.95898_t Valid prediction for GeneMark_model.95922_t Valid prediction for GeneMark_model.95900_t Valid prediction for GeneMark_model.95966_t Valid prediction for Augustus_model.g36714.t1 Valid prediction for snap_scaffold_25-snap.439-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GeneMark_model.95973_t Couldn't classify 16923, 17008 Couldn't classify 19404, 19616 Sorry, prediction pasa_asmbl_33380.p1 fails validation. (CTG) AC 16923-17008 GT GGG (AGA) AG 18129-18197 GT AAG (GTA) AG 18798-18927 GT AGG (GAC) AG 19404-19616 GT AGG -recovered pasa_asmbl_33380.p1, internal, 18129, 18197 -recovered pasa_asmbl_33380.p1, internal, 18798, 18927 -recovered pasa_asmbl_33380.p1, internal, 19404, 19616 Valid prediction for GeneMark_model.95928_t Valid prediction for GeneMark_model.95968_t Valid prediction for snap_scaffold_25-snap.436-T1 Valid prediction for GlimmerHMM_glimmerT_54989-T1 Valid prediction for GeneMark_model.95980_t Valid prediction for snap_scaffold_25-snap.430-T1 Valid prediction for GlimmerHMM_glimmerT_54991-T1 Valid prediction for Augustus_model.g36720.t1 Valid prediction for snap_scaffold_25-snap.433-T1 Valid prediction for GlimmerHMM_glimmerT_55009-T1 Valid prediction for GeneMark_model.95892_t Valid prediction for Augustus_model.g36721.t1 Valid prediction for GeneMark_model.95944_t Valid prediction for GeneMark_model.95975_t Valid prediction for snap_scaffold_25-snap.479-T1 Valid prediction for Augustus_model.g36719.t1 Valid prediction for snap_scaffold_25-snap.460-T1 Valid prediction for GeneMark_model.95911_t Valid prediction for snap_scaffold_25-snap.470-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for snap_scaffold_25-snap.454-T1 Valid prediction for GeneMark_model.95986_t Valid prediction for Augustus_model.g36725.t1 Couldn't classify 155163, 156326 Sorry, prediction pasa_asmbl_33387.p1 fails validation. (ACC) CA 155163-156326 CA AGC Valid prediction for GeneMark_model.95990_t Valid prediction for snap_scaffold_25-snap.477-T1 Valid prediction for Augustus_model.g36722.t1 Valid prediction for GlimmerHMM_glimmerT_55018-T1 Valid prediction for GlimmerHMM_glimmerT_54988-T1 Valid prediction for Augustus_model.g36713.t1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_55010-T1 Valid prediction for snap_scaffold_25-snap.482-T1 Valid prediction for GeneMark_model.95970_t Valid prediction for GeneMark_model.95893_t Valid prediction for GeneMark_model.95906_t Valid prediction for GeneMark_model.95894_t Valid prediction for snap_scaffold_25-snap.442-T1 Valid prediction for Augustus_model.g36712.t1 Valid prediction for GeneMark_model.95936_t Valid prediction for GlimmerHMM_glimmerT_55015-T1 Valid prediction for snap_scaffold_25-snap.440-T1 Valid prediction for GeneMark_model.95979_t Valid prediction for GlimmerHMM_glimmerT_54996-T1 Valid prediction for GeneMark_model.95921_t Valid prediction for GeneMark_model.95960_t Valid prediction for snap_scaffold_25-snap.451-T1 Valid prediction for GlimmerHMM_glimmerT_55013-T1 Valid prediction for snap_scaffold_25-snap.461-T1 Valid prediction for Augustus_model.g36726.t1 Valid prediction for GeneMark_model.95984_t Valid prediction for CodingQuarry_transcript_38565-T1 Valid prediction for GeneMark_model.95901_t Couldn't classify 233000, 233335 Sorry, prediction pasa_asmbl_34052.p1 fails validation. (GAC) GC 233000-233335 GC AGG Valid prediction for GeneMark_model.95919_t Valid prediction for GlimmerHMM_glimmerT_54997-T1 Valid prediction for snap_scaffold_25-snap.469-T1 Valid prediction for snap_scaffold_25-snap.438-T1 Valid prediction for GeneMark_model.95977_t Valid prediction for GeneMark_model.95889_t Valid prediction for snap_scaffold_25-snap.475-T1 Valid prediction for GeneMark_model.95885_t Valid prediction for GeneMark_model.95945_t Valid prediction for GeneMark_model.95947_t Valid prediction for GeneMark_model.95956_t Valid prediction for Augustus_model.g36723.t1 Valid prediction for GeneMark_model.95925_t Valid prediction for snap_scaffold_25-snap.466-T1 Valid prediction for snap_scaffold_25-snap.447-T1 Valid prediction for GeneMark_model.95965_t Valid prediction for GeneMark_model.95939_t Valid prediction for GeneMark_model.95983_t Valid prediction for GeneMark_model.95964_t Valid prediction for snap_scaffold_25-snap.484-T1 Sorry, intron length (7) is less than minimum required (10) Sorry, intron length (7) is less than minimum required (10) Sorry, intron length (7) is less than minimum required (10) Sorry, intron length (6) is less than minimum required (10) Valid prediction for snap_scaffold_25-snap.441-T1 Valid prediction for GeneMark_model.95896_t Valid prediction for snap_scaffold_25-snap.446-T1 Valid prediction for snap_scaffold_25-snap.448-T1 Valid prediction for pasa_asmbl_34046.p1 Valid prediction for GeneMark_model.95951_t Valid prediction for GlimmerHMM_glimmerT_55014-T1 Valid prediction for snap_scaffold_25-snap.468-T1 Valid prediction for GlimmerHMM_glimmerT_54987-T1 Valid prediction for Augustus_model.g36728.t1 Valid prediction for GlimmerHMM_glimmerT_55021-T1 Valid prediction for GeneMark_model.95963_t Valid prediction for GeneMark_model.95987_t Valid prediction for GeneMark_model.95918_t Valid prediction for GeneMark_model.95949_t Valid prediction for GeneMark_model.95887_t Valid prediction for snap_scaffold_25-snap.457-T1 Valid prediction for snap_scaffold_25-snap.481-T1 Valid prediction for GeneMark_model.95981_t Couldn't classify 298447, 298887 Couldn't classify 299053, 299115 Sorry, prediction pasa_asmbl_34049.p1 fails validation. (CCC) AC 298447-298887 GT AGG (GAA) AG 299053-299115 GA ACG Valid prediction for GlimmerHMM_glimmerT_55004-T1 Valid prediction for Augustus_model.g36715.t1 Valid prediction for CodingQuarry_transcript_38566-T1 Valid prediction for snap_scaffold_25-snap.465-T1 Valid prediction for GeneMark_model.95941_t Valid prediction for GlimmerHMM_glimmerT_55017-T1 Valid prediction for GlimmerHMM_glimmerT_55022-T1 Valid prediction for GlimmerHMM_glimmerT_55000-T1 Valid prediction for GlimmerHMM_glimmerT_54986-T1 Valid prediction for snap_scaffold_25-snap.432-T1 Valid prediction for GlimmerHMM_glimmerT_54990-T1 Valid prediction for GeneMark_model.95914_t Valid prediction for GeneMark_model.95897_t Valid prediction for snap_scaffold_25-snap.456-T1 Valid prediction for GlimmerHMM_glimmerT_54994-T1 Couldn't classify 210576, 210584 Sorry, prediction GeneMark_model.95923_t fails validation. (GGG) AG 210576-210584 GT CAG (AAA) AG 210606-210614 GT TGG (GGA) AG 210638-210658 GT GTG (GGA) AG 212704-212800 GT AGG (GCC) AG 212898-212917 GT CTG (AGG) AG 212949-213108 AG AGA -recovered GeneMark_model.95923_t, terminal, 212949, 213108 -recovered GeneMark_model.95923_t, internal, 210576, 210584 -recovered GeneMark_model.95923_t, internal, 210606, 210614 -recovered GeneMark_model.95923_t, internal, 210638, 210658 -recovered GeneMark_model.95923_t, internal, 212704, 212800 -recovered GeneMark_model.95923_t, internal, 212898, 212917 Valid prediction for GeneMark_model.95912_t Valid prediction for GeneMark_model.95938_t Valid prediction for snap_scaffold_25-snap.453-T1 Valid prediction for Augustus_model.g36718.t1 Valid prediction for Augustus_model.g36727.t1 Valid prediction for snap_scaffold_25-snap.459-T1 Valid prediction for GeneMark_model.95958_t Valid prediction for snap_scaffold_25-snap.472-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for snap_scaffold_25-snap.445-T1 Valid prediction for GeneMark_model.95933_t Valid prediction for GlimmerHMM_glimmerT_55001-T1 Valid prediction for GeneMark_model.95927_t Valid prediction for GeneMark_model.95929_t Valid prediction for GeneMark_model.95899_t Valid prediction for snap_scaffold_25-snap.435-T1 Sorry, intron length (6) is less than minimum required (10) Valid prediction for snap_scaffold_25-snap.462-T1 Valid prediction for GlimmerHMM_glimmerT_55003-T1 Valid prediction for GeneMark_model.95954_t Valid prediction for snap_scaffold_25-snap.444-T1 Valid prediction for HiQ_model.g36710.t1 Valid prediction for GlimmerHMM_glimmerT_55007-T1 Valid prediction for GeneMark_model.95905_t Valid prediction for snap_scaffold_25-snap.434-T1 Valid prediction for GeneMark_model.95974_t Couldn't classify 88732, 88757 Sorry, prediction GeneMark_model.95962_t fails validation. (GAT) AG 88732-88757 GT GGG (ATG) AG 89112-89233 CC AGC -recovered GeneMark_model.95962_t, terminal, 89112, 89233 -recovered GeneMark_model.95962_t, internal, 88732, 88757 Valid prediction for GeneMark_model.95931_t Valid prediction for GeneMark_model.95908_t Valid prediction for GeneMark_model.95907_t Valid prediction for snap_scaffold_25-snap.437-T1 Valid prediction for GeneMark_model.95904_t Valid prediction for GeneMark_model.95972_t Valid prediction for Augustus_model.g36717.t1 Valid prediction for GeneMark_model.95891_t Valid prediction for GlimmerHMM_glimmerT_55023-T1 Valid prediction for GeneMark_model.95943_t Valid prediction for snap_scaffold_25-snap.485-T1 Valid prediction for GeneMark_model.95935_t Valid prediction for GeneMark_model.95916_t Valid prediction for snap_scaffold_25-snap.429-T1 Valid prediction for snap_scaffold_25-snap.463-T1 Valid prediction for GeneMark_model.95989_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 206725, rend_intergenic: 206722 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 21399, rend_intergenic: 18513 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 23969, rend_intergenic: 21666 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 29523, rend_intergenic: 27479 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 37871, rend_intergenic: 31546 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 41323, rend_intergenic: 37936 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 70040, rend_intergenic: 41467 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 86476, rend_intergenic: 74049 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97931, rend_intergenic: 93609 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113329, rend_intergenic: 100182 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131696, rend_intergenic: 113453 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 146823, rend_intergenic: 131976 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 149520, rend_intergenic: 146847 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 152567, rend_intergenic: 149557 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 156521, rend_intergenic: 153565 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162293, rend_intergenic: 157887 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 168214, rend_intergenic: 162452 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 186574, rend_intergenic: 176603 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 188246, rend_intergenic: 187736 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 208847, rend_intergenic: 194866 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 220246, rend_intergenic: 209123 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 252779, rend_intergenic: 220297 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 260715, rend_intergenic: 252806 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 270682, rend_intergenic: 260727 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 287260, rend_intergenic: 270857 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 296967, rend_intergenic: 287909 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 319892, rend_intergenic: 297146 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 327723 -exon list size: 1595 building trellis 0.1 0.1 0.2 0.3 0.3 0.4 0.4 0.5 0.6 0.6 0.7 0.8 0.8 0.9 0.9 1.0 1.1 1.1 1.2 1.3 1.3 1.4 1.4 1.5 1.6 1.6 1.7 1.8 1.8 1.9 1.9 2.0 2.1 2.1 2.2 2.3 2.3 2.4 2.4 2.5 2.6 2.6 2.7 2.8 2.8 2.9 2.9 3.0 3.1 3.1 3.2 3.3 3.3 3.4 3.4 3.5 3.6 3.6 3.7 3.8 3.8 3.9 3.9 4.0 4.1 4.1 4.2 4.3 4.3 4.4 4.4 4.5 4.6 4.6 4.7 4.8 4.8 4.9 4.9 5.0 5.1 5.1 5.2 5.3 5.3 5.4 5.4 5.5 5.6 5.6 5.7 5.8 5.8 5.9 5.9 6.0 6.1 6.1 6.2 6.3 6.3 6.4 6.4 6.5 6.6 6.6 6.7 6.8 6.8 6.9 7.0 7.0 7.1 7.1 7.2 7.3 7.3 7.4 7.5 7.5 7.6 7.6 7.7 7.8 7.8 7.9 8.0 8.0 8.1 8.1 8.2 8.3 8.3 8.4 8.5 8.5 8.6 8.6 8.7 8.8 8.8 8.9 9.0 9.0 9.1 9.1 9.2 9.3 9.3 9.4 9.5 9.5 9.6 9.6 9.7 9.8 9.8 9.9 10.0 10.0 10.1 10.1 10.2 10.3 10.3 10.4 10.5 10.5 10.6 10.6 10.7 10.8 10.8 10.9 11.0 11.0 11.1 11.1 11.2 11.3 11.3 11.4 11.5 11.5 11.6 11.6 11.7 11.8 11.8 11.9 12.0 12.0 12.1 12.1 12.2 12.3 12.3 12.4 12.5 12.5 12.6 12.6 12.7 12.8 12.8 12.9 13.0 13.0 13.1 13.1 13.2 13.3 13.3 13.4 13.5 13.5 13.6 13.7 13.7 13.8 13.8 13.9 14.0 14.0 14.1 14.2 14.2 14.3 14.3 14.4 14.5 14.5 14.6 14.7 14.7 14.8 14.8 14.9 15.0 15.0 15.1 15.2 15.2 15.3 15.3 15.4 15.5 15.5 15.6 15.7 15.7 15.8 15.8 15.9 16.0 16.0 16.1 16.2 16.2 16.3 16.3 16.4 16.5 16.5 16.6 16.7 16.7 16.8 16.8 16.9 17.0 17.0 17.1 17.2 17.2 17.3 17.3 17.4 17.5 17.5 17.6 17.7 17.7 17.8 17.8 17.9 18.0 18.0 18.1 18.2 18.2 18.3 18.3 18.4 18.5 18.5 18.6 18.7 18.7 18.8 18.8 18.9 19.0 19.0 19.1 19.2 19.2 19.3 19.3 19.4 19.5 19.5 19.6 19.7 19.7 19.8 19.8 19.9 20.0 20.0 20.1 20.2 20.2 20.3 20.4 20.4 20.5 20.5 20.6 20.7 20.7 20.8 20.9 20.9 21.0 21.0 21.1 21.2 21.2 21.3 21.4 21.4 21.5 21.5 21.6 21.7 21.7 21.8 21.9 21.9 22.0 22.0 22.1 22.2 22.2 22.3 22.4 22.4 22.5 22.5 22.6 22.7 22.7 22.8 22.9 22.9 23.0 23.0 23.1 23.2 23.2 23.3 23.4 23.4 23.5 23.5 23.6 23.7 23.7 23.8 23.9 23.9 24.0 24.0 24.1 24.2 24.2 24.3 24.4 24.4 24.5 24.5 24.6 24.7 24.7 24.8 24.9 24.9 25.0 25.0 25.1 25.2 25.2 25.3 25.4 25.4 25.5 25.5 25.6 25.7 25.7 25.8 25.9 25.9 26.0 26.0 26.1 26.2 26.2 26.3 26.4 26.4 26.5 26.5 26.6 26.7 26.7 26.8 26.9 26.9 27.0 27.1 27.1 27.2 27.2 27.3 27.4 27.4 27.5 27.6 27.6 27.7 27.7 27.8 27.9 27.9 28.0 28.1 28.1 28.2 28.2 28.3 28.4 28.4 28.5 28.6 28.6 28.7 28.7 28.8 28.9 28.9 29.0 29.1 29.1 29.2 29.2 29.3 29.4 29.4 29.5 29.6 29.6 29.7 29.7 29.8 29.9 29.9 30.0 30.1 30.1 30.2 30.2 30.3 30.4 30.4 30.5 30.6 30.6 30.7 30.7 30.8 30.9 30.9 31.0 31.1 31.1 31.2 31.2 31.3 31.4 31.4 31.5 31.6 31.6 31.7 31.7 31.8 31.9 31.9 32.0 32.1 32.1 32.2 32.2 32.3 32.4 32.4 32.5 32.6 32.6 32.7 32.7 32.8 32.9 32.9 33.0 33.1 33.1 33.2 33.2 33.3 33.4 33.4 33.5 33.6 33.6 33.7 33.8 33.8 33.9 33.9 34.0 34.1 34.1 34.2 34.3 34.3 34.4 34.4 34.5 34.6 34.6 34.7 34.8 34.8 34.9 34.9 35.0 35.1 35.1 35.2 35.3 35.3 35.4 35.4 35.5 35.6 35.6 35.7 35.8 35.8 35.9 35.9 36.0 36.1 36.1 36.2 36.3 36.3 36.4 36.4 36.5 36.6 36.6 36.7 36.8 36.8 36.9 36.9 37.0 37.1 37.1 37.2 37.3 37.3 37.4 37.4 37.5 37.6 37.6 37.7 37.8 37.8 37.9 37.9 38.0 38.1 38.1 38.2 38.3 38.3 38.4 38.4 38.5 38.6 38.6 38.7 38.8 38.8 38.9 38.9 39.0 39.1 39.1 39.2 39.3 39.3 39.4 39.4 39.5 39.6 39.6 39.7 39.8 39.8 39.9 39.9 40.0 40.1 40.1 40.2 40.3 40.3 40.4 40.5 40.5 40.6 40.6 40.7 40.8 40.8 40.9 41.0 41.0 41.1 41.1 41.2 41.3 41.3 41.4 41.5 41.5 41.6 41.6 41.7 41.8 41.8 41.9 42.0 42.0 42.1 42.1 42.2 42.3 42.3 42.4 42.5 42.5 42.6 42.6 42.7 42.8 42.8 42.9 43.0 43.0 43.1 43.1 43.2 43.3 43.3 43.4 43.5 43.5 43.6 43.6 43.7 43.8 43.8 43.9 44.0 44.0 44.1 44.1 44.2 44.3 44.3 44.4 44.5 44.5 44.6 44.6 44.7 44.8 44.8 44.9 45.0 45.0 45.1 45.1 45.2 45.3 45.3 45.4 45.5 45.5 45.6 45.6 45.7 45.8 45.8 45.9 46.0 46.0 46.1 46.1 46.2 46.3 46.3 46.4 46.5 46.5 46.6 46.6 46.7 46.8 46.8 46.9 47.0 47.0 47.1 47.2 47.2 47.3 47.3 47.4 47.5 47.5 47.6 47.7 47.7 47.8 47.8 47.9 48.0 48.0 48.1 48.2 48.2 48.3 48.3 48.4 48.5 48.5 48.6 48.7 48.7 48.8 48.8 48.9 49.0 49.0 49.1 49.2 49.2 49.3 49.3 49.4 49.5 49.5 49.6 49.7 49.7 49.8 49.8 49.9 50.0 50.0 50.1 50.2 50.2 50.3 50.3 50.4 50.5 50.5 50.6 50.7 50.7 50.8 50.8 50.9 51.0 51.0 51.1 51.2 51.2 51.3 51.3 51.4 51.5 51.5 51.6 51.7 51.7 51.8 51.8 51.9 52.0 52.0 52.1 52.2 52.2 52.3 52.3 52.4 52.5 52.5 52.6 52.7 52.7 52.8 52.8 52.9 53.0 53.0 53.1 53.2 53.2 53.3 53.4 53.4 53.5 53.5 53.6 53.7 53.7 53.8 53.9 53.9 54.0 54.0 54.1 54.2 54.2 54.3 54.4 54.4 54.5 54.5 54.6 54.7 54.7 54.8 54.9 54.9 55.0 55.0 55.1 55.2 55.2 55.3 55.4 55.4 55.5 55.5 55.6 55.7 55.7 55.8 55.9 55.9 56.0 56.0 56.1 56.2 56.2 56.3 56.4 56.4 56.5 56.5 56.6 56.7 56.7 56.8 56.9 56.9 57.0 57.0 57.1 57.2 57.2 57.3 57.4 57.4 57.5 57.5 57.6 57.7 57.7 57.8 57.9 57.9 58.0 58.0 58.1 58.2 58.2 58.3 58.4 58.4 58.5 58.5 58.6 58.7 58.7 58.8 58.9 58.9 59.0 59.0 59.1 59.2 59.2 59.3 59.4 59.4 59.5 59.5 59.6 59.7 59.7 59.8 59.9 59.9 60.0 60.1 60.1 60.2 60.2 60.3 60.4 60.4 60.5 60.6 60.6 60.7 60.7 60.8 60.9 60.9 61.0 61.1 61.1 61.2 61.2 61.3 61.4 61.4 61.5 61.6 61.6 61.7 61.7 61.8 61.9 61.9 62.0 62.1 62.1 62.2 62.2 62.3 62.4 62.4 62.5 62.6 62.6 62.7 62.7 62.8 62.9 62.9 63.0 63.1 63.1 63.2 63.2 63.3 63.4 63.4 63.5 63.6 63.6 63.7 63.7 63.8 63.9 63.9 64.0 64.1 64.1 64.2 64.2 64.3 64.4 64.4 64.5 64.6 64.6 64.7 64.7 64.8 64.9 64.9 65.0 65.1 65.1 65.2 65.2 65.3 65.4 65.4 65.5 65.6 65.6 65.7 65.7 65.8 65.9 65.9 66.0 66.1 66.1 66.2 66.2 66.3 66.4 66.4 66.5 66.6 66.6 66.7 66.8 66.8 66.9 66.9 67.0 67.1 67.1 67.2 67.3 67.3 67.4 67.4 67.5 67.6 67.6 67.7 67.8 67.8 67.9 67.9 68.0 68.1 68.1 68.2 68.3 68.3 68.4 68.4 68.5 68.6 68.6 68.7 68.8 68.8 68.9 68.9 69.0 69.1 69.1 69.2 69.3 69.3 69.4 69.4 69.5 69.6 69.6 69.7 69.8 69.8 69.9 69.9 70.0 70.1 70.1 70.2 70.3 70.3 70.4 70.4 70.5 70.6 70.6 70.7 70.8 70.8 70.9 70.9 71.0 71.1 71.1 71.2 71.3 71.3 71.4 71.4 71.5 71.6 71.6 71.7 71.8 71.8 71.9 71.9 72.0 72.1 72.1 72.2 72.3 72.3 72.4 72.4 72.5 72.6 72.6 72.7 72.8 72.8 72.9 72.9 73.0 73.1 73.1 73.2 73.3 73.3 73.4 73.5 73.5 73.6 73.6 73.7 73.8 73.8 73.9 74.0 74.0 74.1 74.1 74.2 74.3 74.3 74.4 74.5 74.5 74.6 74.6 74.7 74.8 74.8 74.9 75.0 75.0 75.1 75.1 75.2 75.3 75.3 75.4 75.5 75.5 75.6 75.6 75.7 75.8 75.8 75.9 76.0 76.0 76.1 76.1 76.2 76.3 76.3 76.4 76.5 76.5 76.6 76.6 76.7 76.8 76.8 76.9 77.0 77.0 77.1 77.1 77.2 77.3 77.3 77.4 77.5 77.5 77.6 77.6 77.7 77.8 77.8 77.9 78.0 78.0 78.1 78.1 78.2 78.3 78.3 78.4 78.5 78.5 78.6 78.6 78.7 78.8 78.8 78.9 79.0 79.0 79.1 79.1 79.2 79.3 79.3 79.4 79.5 79.5 79.6 79.6 79.7 79.8 79.8 79.9 80.0 80.0 80.1 80.2 80.2 80.3 80.3 80.4 80.5 80.5 80.6 80.7 80.7 80.8 80.8 80.9 81.0 81.0 81.1 81.2 81.2 81.3 81.3 81.4 81.5 81.5 81.6 81.7 81.7 81.8 81.8 81.9 82.0 82.0 82.1 82.2 82.2 82.3 82.3 82.4 82.5 82.5 82.6 82.7 82.7 82.8 82.8 82.9 83.0 83.0 83.1 83.2 83.2 83.3 83.3 83.4 83.5 83.5 83.6 83.7 83.7 83.8 83.8 83.9 84.0 84.0 84.1 84.2 84.2 84.3 84.3 84.4 84.5 84.5 84.6 84.7 84.7 84.8 84.8 84.9 85.0 85.0 85.1 85.2 85.2 85.3 85.3 85.4 85.5 85.5 85.6 85.7 85.7 85.8 85.8 85.9 86.0 86.0 86.1 86.2 86.2 86.3 86.3 86.4 86.5 86.5 86.6 86.7 86.7 86.8 86.9 86.9 87.0 87.0 87.1 87.2 87.2 87.3 87.4 87.4 87.5 87.5 87.6 87.7 87.7 87.8 87.9 87.9 88.0 88.0 88.1 88.2 88.2 88.3 88.4 88.4 88.5 88.5 88.6 88.7 88.7 88.8 88.9 88.9 89.0 89.0 89.1 89.2 89.2 89.3 89.4 89.4 89.5 89.5 89.6 89.7 89.7 89.8 89.9 89.9 90.0 90.0 90.1 90.2 90.2 90.3 90.4 90.4 90.5 90.5 90.6 90.7 90.7 90.8 90.9 90.9 91.0 91.0 91.1 91.2 91.2 91.3 91.4 91.4 91.5 91.5 91.6 91.7 91.7 91.8 91.9 91.9 92.0 92.0 92.1 92.2 92.2 92.3 92.4 92.4 92.5 92.5 92.6 92.7 92.7 92.8 92.9 92.9 93.0 93.0 93.1 93.2 93.2 93.3 93.4 93.4 93.5 93.6 93.6 93.7 93.7 93.8 93.9 93.9 94.0 94.1 94.1 94.2 94.2 94.3 94.4 94.4 94.5 94.6 94.6 94.7 94.7 94.8 94.9 94.9 95.0 95.1 95.1 95.2 95.2 95.3 95.4 95.4 95.5 95.6 95.6 95.7 95.7 95.8 95.9 95.9 96.0 96.1 96.1 96.2 96.2 96.3 96.4 96.4 96.5 96.6 96.6 96.7 96.7 96.8 96.9 96.9 97.0 97.1 97.1 97.2 97.2 97.3 97.4 97.4 97.5 97.6 97.6 97.7 97.7 97.8 97.9 97.9 98.0 98.1 98.1 98.2 98.2 98.3 98.4 98.4 98.5 98.6 98.6 98.7 98.7 98.8 98.9 98.9 99.0 99.1 99.1 99.2 99.2 99.3 99.4 99.4 99.5 99.6 99.6 99.7 99.7 99.8 99.9 99.9 -found 69 predictions from path traversal Error with prediction: GlimmerHMM lend_intergenic: 206725, rend_intergenic: 206722 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 21399, rend_intergenic: 18513 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 23969, rend_intergenic: 21666 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 29523, rend_intergenic: 27479 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 37871, rend_intergenic: 31546 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 41323, rend_intergenic: 37936 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 70040, rend_intergenic: 41467 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 86476, rend_intergenic: 74049 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97931, rend_intergenic: 93609 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113329, rend_intergenic: 100182 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131696, rend_intergenic: 113453 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 146823, rend_intergenic: 131976 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 149520, rend_intergenic: 146847 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 152567, rend_intergenic: 149557 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 156521, rend_intergenic: 153565 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162293, rend_intergenic: 157887 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 168214, rend_intergenic: 162452 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 186574, rend_intergenic: 176603 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 188246, rend_intergenic: 187736 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 208847, rend_intergenic: 194866 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 220246, rend_intergenic: 209123 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 252779, rend_intergenic: 220297 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 260715, rend_intergenic: 252806 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 270682, rend_intergenic: 260727 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 287260, rend_intergenic: 270857 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 296967, rend_intergenic: 287909 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 319892, rend_intergenic: 297146 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 21 predictions persist after filtering for low support