-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_25/scaffold_25_188634-506472 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_25-snap.74-T1 Valid prediction for HiQ_model.g36591.t1 Valid prediction for GeneMark_model.95383_t Valid prediction for snap_scaffold_25-snap.78-T1 Valid prediction for GeneMark_model.95335_t Valid prediction for GlimmerHMM_glimmerT_54751-T1 Valid prediction for snap_scaffold_25-snap.44-T1 Valid prediction for GeneMark_model.95421_t Valid prediction for snap_scaffold_25-snap.76-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_54778-T1 Valid prediction for GeneMark_model.95415_t Valid prediction for GeneMark_model.95380_t Valid prediction for GeneMark_model.95375_t Valid prediction for GeneMark_model.95427_t Valid prediction for GeneMark_model.95349_t Valid prediction for snap_scaffold_25-snap.45-T1 Valid prediction for snap_scaffold_25-snap.54-T1 Valid prediction for GeneMark_model.95418_t Valid prediction for GlimmerHMM_glimmerT_54745-T1 Valid prediction for snap_scaffold_25-snap.71-T1 Valid prediction for GeneMark_model.95388_t Valid prediction for GeneMark_model.95412_t Valid prediction for GeneMark_model.95419_t Valid prediction for snap_scaffold_25-snap.104-T1 Valid prediction for snap_scaffold_25-snap.56-T1 Valid prediction for Augustus_model.g36601.t1 Valid prediction for Augustus_model.g36619.t1 Valid prediction for Augustus_model.g36604.t1 Valid prediction for snap_scaffold_25-snap.63-T1 Valid prediction for GeneMark_model.95406_t Valid prediction for Augustus_model.g36592.t1 Valid prediction for GeneMark_model.95365_t Valid prediction for snap_scaffold_25-snap.59-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_54787-T1 Valid prediction for GlimmerHMM_glimmerT_54738-T1 Valid prediction for GlimmerHMM_glimmerT_54775-T1 Valid prediction for snap_scaffold_25-snap.91-T1 Valid prediction for GeneMark_model.95343_t Valid prediction for GlimmerHMM_glimmerT_54780-T1 Valid prediction for snap_scaffold_25-snap.69-T1 Valid prediction for Augustus_model.g36620.t1 Valid prediction for snap_scaffold_25-snap.79-T1 Valid prediction for snap_scaffold_25-snap.52-T1 Valid prediction for GeneMark_model.95345_t Valid prediction for Augustus_model.g36598.t1 Valid prediction for GeneMark_model.95359_t Valid prediction for GeneMark_model.95378_t Valid prediction for Augustus_model.g36600.t1 Valid prediction for GlimmerHMM_glimmerT_54756-T1 Valid prediction for GlimmerHMM_glimmerT_54758-T1 Valid prediction for GeneMark_model.95354_t Valid prediction for Augustus_model.g36607.t1 Valid prediction for snap_scaffold_25-snap.94-T1 Valid prediction for snap_scaffold_25-snap.67-T1 Valid prediction for GeneMark_model.95347_t Valid prediction for snap_scaffold_25-snap.51-T1 Valid prediction for GeneMark_model.95408_t Valid prediction for GlimmerHMM_glimmerT_54749-T1 Valid prediction for pasa_asmbl_33322.p1 Valid prediction for GlimmerHMM_glimmerT_54744-T1 Valid prediction for GlimmerHMM_glimmerT_54773-T1 Valid prediction for GeneMark_model.95339_t Valid prediction for GlimmerHMM_glimmerT_54752-T1 Valid prediction for snap_scaffold_25-snap.99-T1 Valid prediction for snap_scaffold_25-snap.64-T1 Valid prediction for GeneMark_model.95423_t Valid prediction for GeneMark_model.95341_t Valid prediction for GeneMark_model.95361_t Valid prediction for GeneMark_model.95368_t Valid prediction for snap_scaffold_25-snap.57-T1 Valid prediction for GeneMark_model.95410_t Valid prediction for snap_scaffold_25-snap.48-T1 Valid prediction for snap_scaffold_25-snap.86-T1 Valid prediction for GeneMark_model.95397_t Valid prediction for GeneMark_model.95366_t Valid prediction for GlimmerHMM_glimmerT_54785-T1 Valid prediction for GeneMark_model.95394_t Valid prediction for snap_scaffold_25-snap.84-T1 Couldn't classify 315298, 315687 Sorry, prediction pasa_asmbl_33327.p1 fails validation. (CCA) CA 315298-315687 TA GAT Valid prediction for GeneMark_model.95385_t Couldn't classify 30742, 30890 Couldn't classify 31593, 31676 Couldn't classify 33285, 33374 Couldn't classify 34392, 34614 Sorry, prediction pasa_asmbl_33314.p1 fails validation. (CGC) GT 30742-30890 GT AGG (AGA) AG 31593-31676 AT ATA (GTA) AC 33285-33374 GT GGG (CTA) AG 34392-34614 TC ACT Valid prediction for HiQ_model.g36614.t1 Valid prediction for CodingQuarry_transcript_38542-T1 Valid prediction for snap_scaffold_25-snap.98-T1 Valid prediction for GeneMark_model.95390_t Valid prediction for GlimmerHMM_glimmerT_54759-T1 Valid prediction for GeneMark_model.95370_t Valid prediction for HiQ_model.g36610.t1 Valid prediction for GeneMark_model.95400_t Valid prediction for pasa_asmbl_33319.p1 Valid prediction for snap_scaffold_25-snap.82-T1 Valid prediction for GlimmerHMM_glimmerT_54746-T1 Valid prediction for GlimmerHMM_glimmerT_54743-T1 Valid prediction for CodingQuarry_transcript_38541-T1 Valid prediction for GeneMark_model.95374_t Valid prediction for snap_scaffold_25-snap.72-T1 Valid prediction for GeneMark_model.95381_t Valid prediction for GeneMark_model.95357_t Valid prediction for snap_scaffold_25-snap.102-T1 Valid prediction for GeneMark_model.95403_t Valid prediction for GeneMark_model.95392_t Valid prediction for GeneMark_model.95425_t Valid prediction for snap_scaffold_25-snap.81-T1 Valid prediction for GeneMark_model.95417_t Couldn't classify 101127, 101235 Sorry, prediction pasa_asmbl_33315.p1 fails validation. (CAC) AC 101127-101235 GT AGG (GAC) AG 101463-101504 GT AAG (TGT) AG 101983-102117 GT TGG (AGG) AG 102491-102564 GT AGG (CCT) AG 102693-102848 AG AGA -recovered pasa_asmbl_33315.p1, terminal, 102693, 102848 -recovered pasa_asmbl_33315.p1, internal, 101463, 101504 -recovered pasa_asmbl_33315.p1, internal, 101983, 102117 -recovered pasa_asmbl_33315.p1, internal, 102491, 102564 Valid prediction for snap_scaffold_25-snap.62-T1 Valid prediction for snap_scaffold_25-snap.97-T1 Valid prediction for GlimmerHMM_glimmerT_54776-T1 Valid prediction for GeneMark_model.95352_t Valid prediction for GeneMark_model.95363_t Valid prediction for snap_scaffold_25-snap.88-T1 Valid prediction for GlimmerHMM_glimmerT_54748-T1 Valid prediction for GeneMark_model.95372_t Valid prediction for GeneMark_model.95387_t Valid prediction for Augustus_model.g36612.t1 Valid prediction for GeneMark_model.95342_t Valid prediction for GeneMark_model.95398_t Valid prediction for snap_scaffold_25-snap.68-T1 Valid prediction for snap_scaffold_25-snap.65-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_54769-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for CodingQuarry_transcript_38540-T1 Valid prediction for GeneMark_model.95338_t Valid prediction for Augustus_model.g36608.t1 Valid prediction for snap_scaffold_25-snap.96-T1 Valid prediction for GeneMark_model.95424_t Couldn't classify 184714, 184759 Couldn't classify 186380, 186445 Sorry, prediction pasa_asmbl_33960.p1 fails validation. (CTA) CC 184714-184759 GT AGG (ATG) AG 184860-184958 GT GGG (ATA) AG 185469-185560 GT AGG (GTG) AG 186380-186445 AA ACA -recovered pasa_asmbl_33960.p1, initial, 184860, 184958 -recovered pasa_asmbl_33960.p1, internal, 184860, 184958 -recovered pasa_asmbl_33960.p1, internal, 185469, 185560 Valid prediction for GeneMark_model.95389_t Couldn't classify 54698, 54784 Couldn't classify 57188, 57331 Sorry, prediction pasa_asmbl_34532.p1 fails validation. (AGA) AT 54698-54784 GT GGG (CTG) AG 55806-55956 GT AGG (ACG) AG 56227-56543 GT AGG (ATC) AG 57188-57331 CA ACC -recovered pasa_asmbl_34532.p1, internal, 55806, 55956 -recovered pasa_asmbl_34532.p1, internal, 56227, 56543 Couldn't classify 76534, 76741 Sorry, prediction pasa_asmbl_33977.p1 fails validation. (ATG) CC 75935-75937 GT TGG (GTA) AG 76133-76236 GT GAG (GGG) AG 76534-76741 AG TGA -recovered pasa_asmbl_33977.p1, initial, 75935, 75937 -recovered pasa_asmbl_33977.p1, internal, 76133, 76236 Valid prediction for GeneMark_model.95355_t Valid prediction for snap_scaffold_25-snap.85-T1 Valid prediction for snap_scaffold_25-snap.106-T1 Valid prediction for GeneMark_model.95407_t Valid prediction for GeneMark_model.95346_t Valid prediction for GlimmerHMM_glimmerT_54754-T1 Valid prediction for snap_scaffold_25-snap.77-T1 Valid prediction for snap_scaffold_25-snap.47-T1 Valid prediction for pasa_asmbl_33980.p1 Valid prediction for snap_scaffold_25-snap.66-T1 Valid prediction for GeneMark_model.95420_t Valid prediction for snap_scaffold_25-snap.93-T1 Valid prediction for GlimmerHMM_glimmerT_54757-T1 Valid prediction for GlimmerHMM_glimmerT_54765-T1 Valid prediction for GeneMark_model.95364_t Valid prediction for GeneMark_model.95369_t Valid prediction for GlimmerHMM_glimmerT_54774-T1 Valid prediction for Augustus_model.g36611.t1 Valid prediction for GeneMark_model.95336_t Valid prediction for snap_scaffold_25-snap.58-T1 Valid prediction for GeneMark_model.95371_t Couldn't classify 242973, 243111 Couldn't classify 243377, 243579 Sorry, prediction pasa_asmbl_34514.p1 fails validation. (ACT) GC 242973-243111 GT AGG (GCA) AG 243377-243579 CC CCC Valid prediction for snap_scaffold_25-snap.46-T1 Valid prediction for snap_scaffold_25-snap.43-T1 Valid prediction for Augustus_model.g36603.t1 Valid prediction for Augustus_model.g36602.t1 Valid prediction for snap_scaffold_25-snap.87-T1 Valid prediction for Augustus_model.g36616.t1 Valid prediction for GeneMark_model.95376_t Valid prediction for Augustus_model.g36599.t1 Valid prediction for GlimmerHMM_glimmerT_54761-T1 Valid prediction for GlimmerHMM_glimmerT_54786-T1 Valid prediction for GeneMark_model.95367_t Valid prediction for CodingQuarry_transcript_38535-T1 Valid prediction for GlimmerHMM_glimmerT_54763-T1 Valid prediction for snap_scaffold_25-snap.50-T1 Sorry, intron length (3) is less than minimum required (10) Sorry, intron length (3) is less than minimum required (10) Valid prediction for snap_scaffold_25-snap.75-T1 Valid prediction for CodingQuarry_transcript_38539-T1 Valid prediction for GeneMark_model.95382_t Valid prediction for snap_scaffold_25-snap.92-T1 Valid prediction for Augustus_model.g36617.t1 Valid prediction for GlimmerHMM_glimmerT_54762-T1 Valid prediction for GlimmerHMM_glimmerT_54766-T1 Valid prediction for Augustus_model.g36595.t1 Couldn't classify 96585, 96623 Couldn't classify 97693, 97821 Sorry, prediction pasa_asmbl_33973.p1 fails validation. (TTT) GG 96585-96623 GT TGG (CTG) AG 96808-96920 GT GGG (TGG) AG 97284-97437 GT GAG (GTG) AG 97693-97821 TT TGT -recovered pasa_asmbl_33973.p1, internal, 96808, 96920 -recovered pasa_asmbl_33973.p1, internal, 97284, 97437 Valid prediction for CodingQuarry_transcript_38546-T1 Valid prediction for GlimmerHMM_glimmerT_54771-T1 Valid prediction for snap_scaffold_25-snap.73-T1 Couldn't classify 51026, 51294 Couldn't classify 53283, 53399 Sorry, prediction pasa_asmbl_33981.p1 fails validation. (CCT) CC 51026-51294 GT AAG (GTA) AG 52510-52687 GT AGG (GGG) AG 53283-53399 GC ATG -recovered pasa_asmbl_33981.p1, internal, 52510, 52687 -recovered pasa_asmbl_33981.p1, internal, 53283, 53399 Valid prediction for GeneMark_model.95340_t Valid prediction for Augustus_model.g36605.t1 Valid prediction for GeneMark_model.95391_t Valid prediction for GeneMark_model.95358_t Valid prediction for pasa_asmbl_33978.p1 Valid prediction for GeneMark_model.95360_t Valid prediction for GlimmerHMM_glimmerT_54782-T1 Valid prediction for snap_scaffold_25-snap.101-T1 Valid prediction for GeneMark_model.95399_t Couldn't classify 50349, 50453 Couldn't classify 50738, 50938 Sorry, prediction pasa_asmbl_34601.p2 fails validation. (TGT) TG 50349-50453 GT CTG (GGT) AG 50738-50938 CC ACC Valid prediction for Augustus_model.g36615.t1 Valid prediction for GeneMark_model.95384_t Couldn't classify 165556, 165778 Couldn't classify 166742, 166801 Sorry, prediction pasa_asmbl_33965.p1 fails validation. (CCT) CC 165556-165778 GT AGG (ATG) AG 165945-166011 GT ACG (GAA) AG 166107-166278 GT AGG (ACA) AG 166619-166663 GT AGG (ACT) AG 166742-166801 CA CTC add_exon() Sorry, pasa_asmbl_33965.p1 165945-166011-initial-1 is invalid. -recovered pasa_asmbl_33965.p1, initial, 165945, 166011 -recovered pasa_asmbl_33965.p1, internal, 165945, 166011 -recovered pasa_asmbl_33965.p1, internal, 166107, 166278 -recovered pasa_asmbl_33965.p1, internal, 166619, 166663 Valid prediction for HiQ_model.g36596.t1 Valid prediction for GeneMark_model.95356_t Valid prediction for GlimmerHMM_glimmerT_54740-T1 Valid prediction for GeneMark_model.95377_t Valid prediction for GeneMark_model.95344_t Valid prediction for GlimmerHMM_glimmerT_54747-T1 Valid prediction for pasa_asmbl_33956.p1 Valid prediction for snap_scaffold_25-snap.70-T1 Valid prediction for GlimmerHMM_glimmerT_54777-T1 Valid prediction for GeneMark_model.95414_t Valid prediction for GeneMark_model.95386_t Valid prediction for GlimmerHMM_glimmerT_54772-T1 Valid prediction for Augustus_model.g36593.t1 Valid prediction for snap_scaffold_25-snap.89-T1 Couldn't classify 147460, 147502 Couldn't classify 150057, 150104 Sorry, prediction pasa_asmbl_33969.p1 fails validation. (TCC) AC 147460-147502 GT AGG (TGG) AG 147625-147797 GT AGG (GTT) AG 148121-148198 GT AGG (ACG) AG 149497-149628 GT GGG (GGA) AG 150057-150104 GG GAG -recovered pasa_asmbl_33969.p1, internal, 147625, 147797 -recovered pasa_asmbl_33969.p1, internal, 148121, 148198 -recovered pasa_asmbl_33969.p1, internal, 149497, 149628 Valid prediction for GeneMark_model.95422_t Valid prediction for snap_scaffold_25-snap.49-T1 Valid prediction for GlimmerHMM_glimmerT_54770-T1 Valid prediction for CodingQuarry_transcript_38545-T1 Valid prediction for GeneMark_model.95334_t Valid prediction for GlimmerHMM_glimmerT_54784-T1 Couldn't classify 183267, 183324 Couldn't classify 184558, 184590 Sorry, prediction pasa_asmbl_33961.p1 fails validation. (GTT) TT 183267-183324 GT TGG (ACA) AG 183418-183524 GT TAG (CTT) AG 183888-183929 GT GGG (GAG) AG 184168-184260 GT AGG (GAC) AG 184558-184590 AA TCA -recovered pasa_asmbl_33961.p1, internal, 183418, 183524 -recovered pasa_asmbl_33961.p1, internal, 183888, 183929 -recovered pasa_asmbl_33961.p1, internal, 184168, 184260 Valid prediction for GeneMark_model.95379_t Valid prediction for GlimmerHMM_glimmerT_54753-T1 Valid prediction for GeneMark_model.95409_t Valid prediction for GeneMark_model.95362_t Valid prediction for GeneMark_model.95405_t Valid prediction for GeneMark_model.95351_t Valid prediction for Augustus_model.g36613.t1 Valid prediction for GlimmerHMM_glimmerT_54781-T1 Valid prediction for snap_scaffold_25-snap.61-T1 Valid prediction for GeneMark_model.95333_t Couldn't classify 136349, 136411 Couldn't classify 138401, 138472 Sorry, prediction pasa_asmbl_34570.p1 fails validation. (GGA) CA 136349-136411 GT AGG (AAC) AG 136513-136568 GT ATG (CGG) AG 136827-136872 GT CAG (ATA) AG 136971-137006 GT TGG (GGT) AG 137338-137392 GT AGG (ACT) AG 138232-138302 GT CGG (TTC) AG 138401-138472 GG TAG -recovered pasa_asmbl_34570.p1, internal, 136513, 136568 -recovered pasa_asmbl_34570.p1, internal, 136827, 136872 -recovered pasa_asmbl_34570.p1, internal, 136971, 137006 -recovered pasa_asmbl_34570.p1, internal, 137338, 137392 -recovered pasa_asmbl_34570.p1, internal, 138232, 138302 Couldn't classify 39838, 39947 Couldn't classify 41871, 42028 Sorry, prediction pasa_asmbl_33982.p1 fails validation. (TTC) GC 39838-39947 GT GGG (GTA) AG 40343-40488 GT AGG (GTG) AG 40868-40981 GT AGG (GGC) AG 41871-42028 AC AGA -recovered pasa_asmbl_33982.p1, internal, 40343, 40488 -recovered pasa_asmbl_33982.p1, internal, 40868, 40981 Valid prediction for GeneMark_model.95416_t Valid prediction for GlimmerHMM_glimmerT_54741-T1 Valid prediction for pasa_asmbl_33949.p1 Valid prediction for GlimmerHMM_glimmerT_54750-T1 Valid prediction for GlimmerHMM_glimmerT_54768-T1 Valid prediction for GlimmerHMM_glimmerT_54783-T1 Valid prediction for GlimmerHMM_glimmerT_54760-T1 Valid prediction for GlimmerHMM_glimmerT_54779-T1 Valid prediction for snap_scaffold_25-snap.100-T1 Valid prediction for GlimmerHMM_glimmerT_54764-T1 Valid prediction for GeneMark_model.95337_t Valid prediction for GlimmerHMM_glimmerT_54739-T1 Valid prediction for GlimmerHMM_glimmerT_54755-T1 Valid prediction for GeneMark_model.95393_t Valid prediction for pasa_asmbl_33957.p1 Valid prediction for Augustus_model.g36589.t1 Valid prediction for GeneMark_model.95350_t Valid prediction for Augustus_model.g36618.t1 Valid prediction for snap_scaffold_25-snap.60-T1 Valid prediction for CodingQuarry_transcript_38543-T1 Valid prediction for GeneMark_model.95401_t Valid prediction for GeneMark_model.95426_t Valid prediction for GeneMark_model.95395_t Valid prediction for GeneMark_model.95404_t Valid prediction for GeneMark_model.95348_t Valid prediction for snap_scaffold_25-snap.80-T1 Valid prediction for Augustus_model.g36606.t1 Valid prediction for HiQ_model.g36597.t1 Valid prediction for CodingQuarry_transcript_38538-T1 Couldn't classify 292580, 292800 Sorry, prediction pasa_asmbl_33951.p1 fails validation. (ATG) CA 290381-290456 GT AGG (CCG) AG 290969-291154 GT AGG (AGA) AG 292580-292800 GA GTG -recovered pasa_asmbl_33951.p1, initial, 290381, 290456 -recovered pasa_asmbl_33951.p1, internal, 290969, 291154 Valid prediction for Augustus_model.g36590.t1 Valid prediction for snap_scaffold_25-snap.103-T1 Valid prediction for GeneMark_model.95411_t Valid prediction for GlimmerHMM_glimmerT_54742-T1 Valid prediction for GlimmerHMM_glimmerT_54767-T1 Valid prediction for Augustus_model.g36609.t1 Valid prediction for snap_scaffold_25-snap.53-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for snap_scaffold_25-snap.90-T1 Valid prediction for Augustus_model.g36594.t1 Valid prediction for snap_scaffold_25-snap.83-T1 Valid prediction for GeneMark_model.95413_t Valid prediction for GeneMark_model.95373_t Valid prediction for GeneMark_model.95353_t Valid prediction for snap_scaffold_25-snap.55-T1 Valid prediction for snap_scaffold_25-snap.95-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5410, rend_intergenic: 3200 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 10510, rend_intergenic: 6094 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 15818, rend_intergenic: 13196 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 26906, rend_intergenic: 15945 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 33372, rend_intergenic: 30412 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40696, rend_intergenic: 34357 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50001, rend_intergenic: 41166 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 55860, rend_intergenic: 52450 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 63210, rend_intergenic: 56001 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 74311, rend_intergenic: 71482 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 86682, rend_intergenic: 74321 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100181, rend_intergenic: 89512 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110778, rend_intergenic: 103910 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 144458, rend_intergenic: 110878 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 158094, rend_intergenic: 146645 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 163467, rend_intergenic: 158820 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 171917, rend_intergenic: 166307 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 183883, rend_intergenic: 175830 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 188127, rend_intergenic: 185156 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 204856, rend_intergenic: 188721 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 208760, rend_intergenic: 204955 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 211327, rend_intergenic: 209176 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 218701, rend_intergenic: 212665 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 223844, rend_intergenic: 220062 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 228802, rend_intergenic: 226591 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 238172, rend_intergenic: 229097 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 249536, rend_intergenic: 243931 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 266728, rend_intergenic: 259298 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 283389, rend_intergenic: 266845 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 288364, rend_intergenic: 283694 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 297050, rend_intergenic: 293504 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 310673, rend_intergenic: 297087 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 317839 -exon list size: 1543 building trellis 0.1 0.1 0.2 0.3 0.3 0.4 0.5 0.5 0.6 0.6 0.7 0.8 0.8 0.9 1.0 1.0 1.1 1.2 1.2 1.3 1.4 1.4 1.5 1.6 1.6 1.7 1.7 1.8 1.9 1.9 2.0 2.1 2.1 2.2 2.3 2.3 2.4 2.5 2.5 2.6 2.7 2.7 2.8 2.8 2.9 3.0 3.0 3.1 3.2 3.2 3.3 3.4 3.4 3.5 3.6 3.6 3.7 3.8 3.8 3.9 3.9 4.0 4.1 4.1 4.2 4.3 4.3 4.4 4.5 4.5 4.6 4.7 4.7 4.8 4.9 4.9 5.0 5.0 5.1 5.2 5.2 5.3 5.4 5.4 5.5 5.6 5.6 5.7 5.8 5.8 5.9 6.0 6.0 6.1 6.1 6.2 6.3 6.3 6.4 6.5 6.5 6.6 6.7 6.7 6.8 6.9 6.9 7.0 7.1 7.1 7.2 7.2 7.3 7.4 7.4 7.5 7.6 7.6 7.7 7.8 7.8 7.9 8.0 8.0 8.1 8.2 8.2 8.3 8.3 8.4 8.5 8.5 8.6 8.7 8.7 8.8 8.9 8.9 9.0 9.1 9.1 9.2 9.3 9.3 9.4 9.4 9.5 9.6 9.6 9.7 9.8 9.8 9.9 10.0 10.0 10.1 10.2 10.2 10.3 10.4 10.4 10.5 10.6 10.6 10.7 10.7 10.8 10.9 10.9 11.0 11.1 11.1 11.2 11.3 11.3 11.4 11.5 11.5 11.6 11.7 11.7 11.8 11.8 11.9 12.0 12.0 12.1 12.2 12.2 12.3 12.4 12.4 12.5 12.6 12.6 12.7 12.8 12.8 12.9 12.9 13.0 13.1 13.1 13.2 13.3 13.3 13.4 13.5 13.5 13.6 13.7 13.7 13.8 13.9 13.9 14.0 14.0 14.1 14.2 14.2 14.3 14.4 14.4 14.5 14.6 14.6 14.7 14.8 14.8 14.9 15.0 15.0 15.1 15.1 15.2 15.3 15.3 15.4 15.5 15.5 15.6 15.7 15.7 15.8 15.9 15.9 16.0 16.1 16.1 16.2 16.2 16.3 16.4 16.4 16.5 16.6 16.6 16.7 16.8 16.8 16.9 17.0 17.0 17.1 17.2 17.2 17.3 17.3 17.4 17.5 17.5 17.6 17.7 17.7 17.8 17.9 17.9 18.0 18.1 18.1 18.2 18.3 18.3 18.4 18.4 18.5 18.6 18.6 18.7 18.8 18.8 18.9 19.0 19.0 19.1 19.2 19.2 19.3 19.4 19.4 19.5 19.5 19.6 19.7 19.7 19.8 19.9 19.9 20.0 20.1 20.1 20.2 20.3 20.3 20.4 20.5 20.5 20.6 20.6 20.7 20.8 20.8 20.9 21.0 21.0 21.1 21.2 21.2 21.3 21.4 21.4 21.5 21.6 21.6 21.7 21.7 21.8 21.9 21.9 22.0 22.1 22.1 22.2 22.3 22.3 22.4 22.5 22.5 22.6 22.7 22.7 22.8 22.8 22.9 23.0 23.0 23.1 23.2 23.2 23.3 23.4 23.4 23.5 23.6 23.6 23.7 23.8 23.8 23.9 23.9 24.0 24.1 24.1 24.2 24.3 24.3 24.4 24.5 24.5 24.6 24.7 24.7 24.8 24.9 24.9 25.0 25.0 25.1 25.2 25.2 25.3 25.4 25.4 25.5 25.6 25.6 25.7 25.8 25.8 25.9 26.0 26.0 26.1 26.1 26.2 26.3 26.3 26.4 26.5 26.5 26.6 26.7 26.7 26.8 26.9 26.9 27.0 27.1 27.1 27.2 27.2 27.3 27.4 27.4 27.5 27.6 27.6 27.7 27.8 27.8 27.9 28.0 28.0 28.1 28.2 28.2 28.3 28.3 28.4 28.5 28.5 28.6 28.7 28.7 28.8 28.9 28.9 29.0 29.1 29.1 29.2 29.3 29.3 29.4 29.4 29.5 29.6 29.6 29.7 29.8 29.8 29.9 30.0 30.0 30.1 30.2 30.2 30.3 30.4 30.4 30.5 30.6 30.6 30.7 30.7 30.8 30.9 30.9 31.0 31.1 31.1 31.2 31.3 31.3 31.4 31.5 31.5 31.6 31.7 31.7 31.8 31.8 31.9 32.0 32.0 32.1 32.2 32.2 32.3 32.4 32.4 32.5 32.6 32.6 32.7 32.8 32.8 32.9 32.9 33.0 33.1 33.1 33.2 33.3 33.3 33.4 33.5 33.5 33.6 33.7 33.7 33.8 33.9 33.9 34.0 34.0 34.1 34.2 34.2 34.3 34.4 34.4 34.5 34.6 34.6 34.7 34.8 34.8 34.9 35.0 35.0 35.1 35.1 35.2 35.3 35.3 35.4 35.5 35.5 35.6 35.7 35.7 35.8 35.9 35.9 36.0 36.1 36.1 36.2 36.2 36.3 36.4 36.4 36.5 36.6 36.6 36.7 36.8 36.8 36.9 37.0 37.0 37.1 37.2 37.2 37.3 37.3 37.4 37.5 37.5 37.6 37.7 37.7 37.8 37.9 37.9 38.0 38.1 38.1 38.2 38.3 38.3 38.4 38.4 38.5 38.6 38.6 38.7 38.8 38.8 38.9 39.0 39.0 39.1 39.2 39.2 39.3 39.4 39.4 39.5 39.5 39.6 39.7 39.7 39.8 39.9 39.9 40.0 40.1 40.1 40.2 40.3 40.3 40.4 40.5 40.5 40.6 40.6 40.7 40.8 40.8 40.9 41.0 41.0 41.1 41.2 41.2 41.3 41.4 41.4 41.5 41.6 41.6 41.7 41.7 41.8 41.9 41.9 42.0 42.1 42.1 42.2 42.3 42.3 42.4 42.5 42.5 42.6 42.7 42.7 42.8 42.8 42.9 43.0 43.0 43.1 43.2 43.2 43.3 43.4 43.4 43.5 43.6 43.6 43.7 43.8 43.8 43.9 43.9 44.0 44.1 44.1 44.2 44.3 44.3 44.4 44.5 44.5 44.6 44.7 44.7 44.8 44.9 44.9 45.0 45.0 45.1 45.2 45.2 45.3 45.4 45.4 45.5 45.6 45.6 45.7 45.8 45.8 45.9 46.0 46.0 46.1 46.1 46.2 46.3 46.3 46.4 46.5 46.5 46.6 46.7 46.7 46.8 46.9 46.9 47.0 47.1 47.1 47.2 47.2 47.3 47.4 47.4 47.5 47.6 47.6 47.7 47.8 47.8 47.9 48.0 48.0 48.1 48.2 48.2 48.3 48.3 48.4 48.5 48.5 48.6 48.7 48.7 48.8 48.9 48.9 49.0 49.1 49.1 49.2 49.3 49.3 49.4 49.4 49.5 49.6 49.6 49.7 49.8 49.8 49.9 50.0 50.0 50.1 50.2 50.2 50.3 50.4 50.4 50.5 50.6 50.6 50.7 50.7 50.8 50.9 50.9 51.0 51.1 51.1 51.2 51.3 51.3 51.4 51.5 51.5 51.6 51.7 51.7 51.8 51.8 51.9 52.0 52.0 52.1 52.2 52.2 52.3 52.4 52.4 52.5 52.6 52.6 52.7 52.8 52.8 52.9 52.9 53.0 53.1 53.1 53.2 53.3 53.3 53.4 53.5 53.5 53.6 53.7 53.7 53.8 53.9 53.9 54.0 54.0 54.1 54.2 54.2 54.3 54.4 54.4 54.5 54.6 54.6 54.7 54.8 54.8 54.9 55.0 55.0 55.1 55.1 55.2 55.3 55.3 55.4 55.5 55.5 55.6 55.7 55.7 55.8 55.9 55.9 56.0 56.1 56.1 56.2 56.2 56.3 56.4 56.4 56.5 56.6 56.6 56.7 56.8 56.8 56.9 57.0 57.0 57.1 57.2 57.2 57.3 57.3 57.4 57.5 57.5 57.6 57.7 57.7 57.8 57.9 57.9 58.0 58.1 58.1 58.2 58.3 58.3 58.4 58.4 58.5 58.6 58.6 58.7 58.8 58.8 58.9 59.0 59.0 59.1 59.2 59.2 59.3 59.4 59.4 59.5 59.5 59.6 59.7 59.7 59.8 59.9 59.9 60.0 60.1 60.1 60.2 60.3 60.3 60.4 60.5 60.5 60.6 60.6 60.7 60.8 60.8 60.9 61.0 61.0 61.1 61.2 61.2 61.3 61.4 61.4 61.5 61.6 61.6 61.7 61.7 61.8 61.9 61.9 62.0 62.1 62.1 62.2 62.3 62.3 62.4 62.5 62.5 62.6 62.7 62.7 62.8 62.8 62.9 63.0 63.0 63.1 63.2 63.2 63.3 63.4 63.4 63.5 63.6 63.6 63.7 63.8 63.8 63.9 63.9 64.0 64.1 64.1 64.2 64.3 64.3 64.4 64.5 64.5 64.6 64.7 64.7 64.8 64.9 64.9 65.0 65.0 65.1 65.2 65.2 65.3 65.4 65.4 65.5 65.6 65.6 65.7 65.8 65.8 65.9 66.0 66.0 66.1 66.1 66.2 66.3 66.3 66.4 66.5 66.5 66.6 66.7 66.7 66.8 66.9 66.9 67.0 67.1 67.1 67.2 67.2 67.3 67.4 67.4 67.5 67.6 67.6 67.7 67.8 67.8 67.9 68.0 68.0 68.1 68.2 68.2 68.3 68.3 68.4 68.5 68.5 68.6 68.7 68.7 68.8 68.9 68.9 69.0 69.1 69.1 69.2 69.3 69.3 69.4 69.4 69.5 69.6 69.6 69.7 69.8 69.8 69.9 70.0 70.0 70.1 70.2 70.2 70.3 70.4 70.4 70.5 70.6 70.6 70.7 70.7 70.8 70.9 70.9 71.0 71.1 71.1 71.2 71.3 71.3 71.4 71.5 71.5 71.6 71.7 71.7 71.8 71.8 71.9 72.0 72.0 72.1 72.2 72.2 72.3 72.4 72.4 72.5 72.6 72.6 72.7 72.8 72.8 72.9 72.9 73.0 73.1 73.1 73.2 73.3 73.3 73.4 73.5 73.5 73.6 73.7 73.7 73.8 73.9 73.9 74.0 74.0 74.1 74.2 74.2 74.3 74.4 74.4 74.5 74.6 74.6 74.7 74.8 74.8 74.9 75.0 75.0 75.1 75.1 75.2 75.3 75.3 75.4 75.5 75.5 75.6 75.7 75.7 75.8 75.9 75.9 76.0 76.1 76.1 76.2 76.2 76.3 76.4 76.4 76.5 76.6 76.6 76.7 76.8 76.8 76.9 77.0 77.0 77.1 77.2 77.2 77.3 77.3 77.4 77.5 77.5 77.6 77.7 77.7 77.8 77.9 77.9 78.0 78.1 78.1 78.2 78.3 78.3 78.4 78.4 78.5 78.6 78.6 78.7 78.8 78.8 78.9 79.0 79.0 79.1 79.2 79.2 79.3 79.4 79.4 79.5 79.5 79.6 79.7 79.7 79.8 79.9 79.9 80.0 80.1 80.1 80.2 80.3 80.3 80.4 80.5 80.5 80.6 80.6 80.7 80.8 80.8 80.9 81.0 81.0 81.1 81.2 81.2 81.3 81.4 81.4 81.5 81.6 81.6 81.7 81.7 81.8 81.9 81.9 82.0 82.1 82.1 82.2 82.3 82.3 82.4 82.5 82.5 82.6 82.7 82.7 82.8 82.8 82.9 83.0 83.0 83.1 83.2 83.2 83.3 83.4 83.4 83.5 83.6 83.6 83.7 83.8 83.8 83.9 83.9 84.0 84.1 84.1 84.2 84.3 84.3 84.4 84.5 84.5 84.6 84.7 84.7 84.8 84.9 84.9 85.0 85.0 85.1 85.2 85.2 85.3 85.4 85.4 85.5 85.6 85.6 85.7 85.8 85.8 85.9 86.0 86.0 86.1 86.1 86.2 86.3 86.3 86.4 86.5 86.5 86.6 86.7 86.7 86.8 86.9 86.9 87.0 87.1 87.1 87.2 87.2 87.3 87.4 87.4 87.5 87.6 87.6 87.7 87.8 87.8 87.9 88.0 88.0 88.1 88.2 88.2 88.3 88.3 88.4 88.5 88.5 88.6 88.7 88.7 88.8 88.9 88.9 89.0 89.1 89.1 89.2 89.3 89.3 89.4 89.4 89.5 89.6 89.6 89.7 89.8 89.8 89.9 90.0 90.0 90.1 90.2 90.2 90.3 90.4 90.4 90.5 90.6 90.6 90.7 90.7 90.8 90.9 90.9 91.0 91.1 91.1 91.2 91.3 91.3 91.4 91.5 91.5 91.6 91.7 91.7 91.8 91.8 91.9 92.0 92.0 92.1 92.2 92.2 92.3 92.4 92.4 92.5 92.6 92.6 92.7 92.8 92.8 92.9 92.9 93.0 93.1 93.1 93.2 93.3 93.3 93.4 93.5 93.5 93.6 93.7 93.7 93.8 93.9 93.9 94.0 94.0 94.1 94.2 94.2 94.3 94.4 94.4 94.5 94.6 94.6 94.7 94.8 94.8 94.9 95.0 95.0 95.1 95.1 95.2 95.3 95.3 95.4 95.5 95.5 95.6 95.7 95.7 95.8 95.9 95.9 96.0 96.1 96.1 96.2 96.2 96.3 96.4 96.4 96.5 96.6 96.6 96.7 96.8 96.8 96.9 97.0 97.0 97.1 97.2 97.2 97.3 97.3 97.4 97.5 97.5 97.6 97.7 97.7 97.8 97.9 97.9 98.0 98.1 98.1 98.2 98.3 98.3 98.4 98.4 98.5 98.6 98.6 98.7 98.8 98.8 98.9 99.0 99.0 99.1 99.2 99.2 99.3 99.4 99.4 99.5 99.5 99.6 99.7 99.7 99.8 99.9 99.9 -found 67 predictions from path traversal Error with prediction: snap lend_intergenic: 5410, rend_intergenic: 3200 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 10510, rend_intergenic: 6094 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 15818, rend_intergenic: 13196 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 26906, rend_intergenic: 15945 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 33372, rend_intergenic: 30412 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 40696, rend_intergenic: 34357 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 50001, rend_intergenic: 41166 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 55860, rend_intergenic: 52450 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 63210, rend_intergenic: 56001 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 74311, rend_intergenic: 71482 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 86682, rend_intergenic: 74321 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 100181, rend_intergenic: 89512 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110778, rend_intergenic: 103910 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 144458, rend_intergenic: 110878 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 158094, rend_intergenic: 146645 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 163467, rend_intergenic: 158820 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 171917, rend_intergenic: 166307 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 183883, rend_intergenic: 175830 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 188127, rend_intergenic: 185156 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 204856, rend_intergenic: 188721 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 208760, rend_intergenic: 204955 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 211327, rend_intergenic: 209176 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 218701, rend_intergenic: 212665 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 223844, rend_intergenic: 220062 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 228802, rend_intergenic: 226591 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 238172, rend_intergenic: 229097 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 249536, rend_intergenic: 243931 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 266728, rend_intergenic: 259298 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 283389, rend_intergenic: 266845 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 288364, rend_intergenic: 283694 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 297050, rend_intergenic: 293504 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 310673, rend_intergenic: 297087 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 41 predictions persist after filtering for low support