-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2496

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 86, 261
Couldn't classify 1025, 1189
Sorry, prediction Augustus_model.g42097.t1 fails validation.
(ACA)	 AG	86-261	GT	AGG
(GAG)	 AG	425-523	GT	AGG
(GAG)	 AG	1025-1189	GT	ATG
-recovered Augustus_model.g42097.t1, internal, 86, 261
-recovered Augustus_model.g42097.t1, internal, 425, 523
-recovered Augustus_model.g42097.t1, internal, 1025, 1189
Couldn't classify 86, 261
Couldn't classify 1025, 1233
Sorry, prediction GeneMark_model.110376_t fails validation.
(ACA)	 AG	86-261	GT	AGG
(GAG)	 AG	425-523	GT	AGG
(GAG)	 AG	1025-1233	GC	CTG
-recovered GeneMark_model.110376_t, internal, 86, 261
-recovered GeneMark_model.110376_t, internal, 425, 523
-recovered GeneMark_model.110376_t, internal, 1025, 1233
Couldn't classify 86, 261
Couldn't classify 1025, 1189
Sorry, prediction snap_scaffold_2496-snap.1-T1 fails validation.
(ACA)	 AG	86-261	GT	AGG
(GAG)	 AG	425-523	GT	AGG
(GAG)	 AG	1025-1189	GT	ATG
-recovered snap_scaffold_2496-snap.1-T1, internal, 86, 261
-recovered snap_scaffold_2496-snap.1-T1, internal, 425, 523
-recovered snap_scaffold_2496-snap.1-T1, internal, 1025, 1189
Valid prediction for GlimmerHMM_glimmerT_63134-T1
add_exon() Sorry, GlimmerHMM_glimmerT_63134-T1 86-297-terminal-1 is invalid.
Couldn't classify 1025, 1111
Sorry, prediction GlimmerHMM_glimmerT_63135-T1 fails validation.
(ATG)	 TC	506-523	GT	AGG
(GAG)	 AG	1025-1111	GT	ACG
-recovered GlimmerHMM_glimmerT_63135-T1, initial, 506, 523
-recovered GlimmerHMM_glimmerT_63135-T1, internal, 1025, 1111
Couldn't classify 4, 261
Couldn't classify 1025, 1201
Sorry, prediction pasa_asmbl_33307.p1 fails validation.
(CCC)	 TC	4-261	GT	AGG
(GAG)	 AG	425-523	GT	AGG
(GAG)	 AG	1025-1201	CT	CCC
-recovered pasa_asmbl_33307.p1, internal, 425, 523

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1245
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support