-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2494

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 854, 1114
Sorry, prediction Augustus_model.g42096.t1 fails validation.
(ATG)	 CT	88-189	GT	AGG
(GGG)	 AG	297-386	GT	AGG
(AAA)	 AG	854-1114	GT	AGG
-recovered Augustus_model.g42096.t1, initial, 88, 189
-recovered Augustus_model.g42096.t1, internal, 297, 386
-recovered Augustus_model.g42096.t1, internal, 854, 1114
Couldn't classify 79, 197
Sorry, prediction snap_scaffold_2494-snap.1-T1 fails validation.
(GCC)	 AG	79-197	GT	TGG
(GGA)	 AG	236-386	GT	AGG
(AAA)	 AG	854-1162	GA	AGG
-recovered snap_scaffold_2494-snap.1-T1, terminal, 854, 1162
-recovered snap_scaffold_2494-snap.1-T1, internal, 79, 197
-recovered snap_scaffold_2494-snap.1-T1, internal, 236, 386
Couldn't classify 105, 386
Sorry, prediction GlimmerHMM_glimmerT_63133-T1 fails validation.
(GAT)	 AG	105-386	GT	AGG
(AAA)	 AG	854-1162	GA	AGG
-recovered GlimmerHMM_glimmerT_63133-T1, terminal, 854, 1162
-recovered GlimmerHMM_glimmerT_63133-T1, internal, 105, 386
Couldn't classify 79, 386
Couldn't classify 1180, 1233
Sorry, prediction GeneMark_model.110375_t fails validation.
(GCC)	 AG	79-386	GT	AGG
(AAA)	 AG	854-1081	GT	CTG
(GAC)	 AG	1104-1114	GT	AGG
(GAG)	 AG	1142-1156	GT	AGG
(GAG)	 AG	1180-1233	GT	AGG
-recovered GeneMark_model.110375_t, internal, 79, 386
-recovered GeneMark_model.110375_t, internal, 854, 1081
-recovered GeneMark_model.110375_t, internal, 1104, 1114
-recovered GeneMark_model.110375_t, internal, 1142, 1156
-recovered GeneMark_model.110375_t, internal, 1180, 1233

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1246
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support