-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_2491

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 337, 669
Couldn't classify 910, 1026
Sorry, prediction snap_scaffold_2491-snap.1-T1 fails validation.
(GGG)	 AG	337-669	GT	CGG
(TCT)	 AG	910-1026	GT	AGG
-recovered snap_scaffold_2491-snap.1-T1, internal, 337, 669
-recovered snap_scaffold_2491-snap.1-T1, internal, 910, 1026
Valid prediction for GeneMark_model.110372_t
Valid prediction for GlimmerHMM_glimmerT_63132-T1
Couldn't classify 337, 528
Couldn't classify 910, 1026
Sorry, prediction Augustus_model.g42095.t1 fails validation.
(GGG)	 AG	337-528	GT	AGG
(TCT)	 AG	910-1026	GT	AGG
-recovered Augustus_model.g42095.t1, internal, 337, 528
-recovered Augustus_model.g42095.t1, internal, 910, 1026

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 97, 272
Sorry, prediction GeneMark_model.110373_t fails validation.
(CCT)	 AG	97-272	GT	TCG
(AGA)	 AG	370-405	GT	GGG
(AGA)	 AG	430-444	GT	GGG
(GTA)	 AG	474-477	AC	AGA
-recovered GeneMark_model.110373_t, terminal, 474, 477
-recovered GeneMark_model.110373_t, internal, 97, 272
-recovered GeneMark_model.110373_t, internal, 370, 405
-recovered GeneMark_model.110373_t, internal, 430, 444

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 1250
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support